use inputPath instead of dataPath per latest best practices #21
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| on: | |
| pull_request: | |
| branches: | |
| - master | |
| - development | |
| push: | |
| branches: | |
| - master | |
| - development | |
| paths: | |
| - .github/workflows/render-module-rmd.yaml | |
| - Biomass_regeneration.Rmd | |
| - Biomass_regeneration.R | |
| name: Render module Rmd | |
| jobs: | |
| render: | |
| name: Render module Rmd | |
| runs-on: ubuntu-20.04 | |
| env: | |
| RSPM: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v1 | |
| - uses: r-lib/actions/setup-pandoc@v1 | |
| - name: Install GDAL and other dependencies | |
| run: | | |
| sudo apt-get install -y \ | |
| libcurl4-openssl-dev \ | |
| libgdal-dev \ | |
| libgeos-dev \ | |
| libgit2-dev \ | |
| libglpk-dev \ | |
| libmagick++-dev \ | |
| libproj-dev \ | |
| libudunits2-dev \ | |
| libxml2-dev \ | |
| python3-gdal | |
| - name: Install remotes, knitr, rmarkdown | |
| run: | | |
| install.packages("remotes") | |
| remotes::install_cran("rmarkdown") | |
| remotes::install_cran("knitr") | |
| shell: Rscript {0} | |
| - name: Install SpaDES | |
| run: | | |
| install.packages("SpaDES", dependencies = TRUE) | |
| shell: Rscript {0} | |
| - name: Install module package dependencies | |
| run: | | |
| pkgs <- SpaDES.core::packages(modules = "Biomass_regeneration", paths = "..") | |
| Require::Require(pkgs[[1]]) | |
| shell: Rscript {0} | |
| - name: Render module Rmd | |
| run: | | |
| rmarkdown::render("Biomass_regeneration.Rmd", encoding = "UTF-8") | |
| shell: Rscript {0} | |
| - name: Commit results | |
| run: | | |
| git config user.email "[email protected]" | |
| git config user.name "GitHub Actions" | |
| git commit Biomass_regeneration.html -m 'Re-build Biomass_regeneration.Rmd' || echo "No changes to commit" | |
| git push https://${{github.actor}}:${{secrets.GITHUB_TOKEN}}@github.com/${{github.repository}}.git HEAD:${{github.ref}} || echo "No changes to commit" |