Ciemat laz

[lazersos]

This update adds the interfaces for KNOSOS to the STELLOPT repository without including the KNOSOS source code. You should now be able to link to the external sources compiled from the KNOSOS branch (Lazerson_SOPT) branch. We've also removed the STELLA sources but this code can also be included in a similar fashion.

Closes issue #174

[joseluisvelasco]

Great! Could you walk me through how to compile it now? Not sure what file should I include and where.

mpif90 -g -O2 -I/usr/include -I/mnt/lustre/ohpc/admin/spack/0.12.1/opt/spack/linux-centos7-x86_64/intel-19.0.5.281/openblas-0.3.6-bwopn5fpda3kcxclpyto2sqybautaofg//include/ -I./include -I/mnt/lustre/home/u6156/STELLOPT/CIEMAT/xintel/libstell_dir -I/mnt/lustre/ohpc/admin/spack/0.12.1/opt/spack/linux-centos7-x86_64/intel-19.0.5.281/netcdf-4.6.1-q6eitnlgurqlhyr6u2glnrtuemdagb3b//include -I/mnt/lustre/ohpc/admin/spack/0.12.1/opt/spack/linux-centos7-x86_64/intel-19.0.5.281/hdf5-1.10.4-2cu2chyblcoo4shx7i3mdewchzsk376r/include -DH5_USE_16_API -I../../VMEC2000/Release -I../../BEAMS3D/Release -I../../BOOTSJ/Release -I../../BNORM/Release -I../../BOOZ_XFORM/Release -I../../COBRAVMEC/Release -I../../DIAGNO/Release -I../../FIELDLINES/Release -I../../J_INVARIANT/Release -I../../MAKEGRID/Release -I../../DKES/Release -I../../NEO/Release -I../../KNOSOS/Release -I../../STELLA/Release -I/mnt/lustre/ohpc/admin/spack/0.12.1/opt/spack/linux-centos7-x86_64/intel-19.0.5.281/netcdf-4.6.1-q6eitnlgurqlhyr6u2glnrtuemdagb3b//include -I/mnt/lustre/ohpc/admin/spack/0.12.1/opt/spack/linux-centos7-x86_64/intel-19.0.5.281/hdf5-1.10.4-2cu2chyblcoo4shx7i3mdewchzsk376r/include -DH5_USE_16_API -I.. -c ../Sources/Chisq/chisq_knosos.f90
chisq_knosos.f90(27): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [KNOSOS_STELLOPT_MOD]
USE knosos_stellopt_mod

[lazersos]

@joseluisvelasco So you need to look at SHARE/make.machine file. In there you'll now find a section:

#######################################################################
#            KNOSOS Options
#######################################################################
  LKNOSOS= T
  KNOSOS_DIR = $(KNOSOS_PATH)
  KNOSOS_INC = -I$(KNOSOS_DIR)/SOURCES
  LIB_KNOSOS = libknosos.a
  KNOSOS_LIB = $(KNOSOS_PATH)/SOURCES/$(LIB_KNOSOS)

You need to set LKNOSOS=T and in your shell define a variable KNOSOS_PATH which points to the root directory of the KNOSOS code (which you need to compile first). Then you simply build stellopt as usual.

[lazersos]

Also make sure you're on the correct branches:

• KNOSOS: Lazerson_SOPT
• STELLOPT: CIEMAT_Laz