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Updating the fitting pauli procedure #320

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fixes #315

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Screenshot from 2024-12-10 10-17-58
Left - single probe particle, Right double probe particle on pyridine example (at the moment in dropbox

@NikoOinonen , @ProkopHapala - please do you have the results for FDBM. It would be nice to compare.
Also some things should be added to the automatic tests.

@ondrejkrejci ondrejkrejci self-assigned this Dec 10, 2024
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Put back the "fit-density" option
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