3d ddpm

[ericspod]

Address some of #1769.

Description

This adds the missing 3d DDPM tutorial which now functions.

Checks

• Avoid including large-size files in the PR.
• Clean up long text outputs from code cells in the notebook.
• For security purposes, please check the contents and remove any sensitive info such as user names and private key.
• Ensure (1) hyperlinks and markdown anchors are working (2) use relative paths for tutorial repo files (3) put figure and graphs in the ./figure folder
• Notebook runs automatically ./runner.sh -t <path to .ipynb file>

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[virginiafdez]

This looks fine by me. Maybe it is good to remove the torch.load warning in the inference section, but besides this, it all looks fine.

[KumoLiu]

Thanks for the PR! Overall looks good to me. Several minor comments.