This repository includes the code and data used within the iTRAQI shiny app.
This app is hosted here https://aushsi.shinyapps.io/itraqi_app/ and it’s code is available here https://github.com/RWParsons/iTRAQI_app/.
The analyses code in this repository is described in the technical report here https://eprints.qut.edu.au/235026/.
- kriging https://rpubs.com/nabilabd/118172
- plots https://r-spatial.github.io/sf/articles/sf5.html
- understanding crs https://www.earthdatascience.org/courses/earth-analytics/spatial-data-r/understand-epsg-wkt-and-other-crs-definition-file-types/
- changing crs https://stackoverflow.com/questions/50372533/changing-crs-of-a-sf-object
- spatial aggregations https://cengel.github.io/R-spatial/spatialops.html
This project uses a {targets}
workflow to fit the models and create all the results visualised in the
interactive app.
graph LR
style Legend fill:#FFFFFF00,stroke:#000000;
style Graph fill:#FFFFFF00,stroke:#000000;
subgraph Legend
direction LR
x7420bd9270f8d27d([""Up to date""]):::uptodate --- xbf4603d6c2c2ad6b([""Stem""]):::none
xbf4603d6c2c2ad6b([""Stem""]):::none --- x70a5fa6bea6f298d[""Pattern""]:::none
end
subgraph Graph
direction LR
x20b8fce94e11cd05(["seifa_files_files"]):::uptodate --> x5f5497709c5ef739["seifa_files"]:::uptodate
x15acd9b064c909c4(["d_drive_times"]):::uptodate --> x5c8a4b58701f0195(["d_gold"]):::uptodate
x24fc4b6a7e38688b(["d_island_rehab_times"]):::uptodate --> x5c8a4b58701f0195(["d_gold"]):::uptodate
x502e395192be8056(["plotting_utils"]):::uptodate --> x0ef21ba3e3751955(["rsq_maps"]):::uptodate
xce1d319486efc243(["vis_shapes"]):::uptodate --> x0ef21ba3e3751955(["rsq_maps"]):::uptodate
x7ac64c2657a7a0da(["itraqi_list"]):::uptodate --> x777ac6aa58ef6eb0(["iTRAQI_acute_maps"]):::uptodate
x502e395192be8056(["plotting_utils"]):::uptodate --> x777ac6aa58ef6eb0(["iTRAQI_acute_maps"]):::uptodate
x84e32dc64694e951(["centre_coords_file"]):::uptodate --> x0f8649c73df6fd69(["d_centre_coords"]):::uptodate
x7ac64c2657a7a0da(["itraqi_list"]):::uptodate --> x4b49cbf96e14f716(["iTRAQI_sa2_map"]):::uptodate
x502e395192be8056(["plotting_utils"]):::uptodate --> x4b49cbf96e14f716(["iTRAQI_sa2_map"]):::uptodate
x6b9c58fabbe5d5ac(["d_rehab_kriged_for_agg"]):::uptodate --> xdd6e281ffd7abb1e(["d_sa1_2011_rehab_time"]):::uptodate
x2d1cfd0ea9fc15e1(["rsq_locations_file"]):::uptodate --> xc6a9168a5e03bc7c(["d_rsq_locations"]):::uptodate
x831ee0369a2a91ad(["d_input_shapes"]):::uptodate --> x6b9c58fabbe5d5ac(["d_rehab_kriged_for_agg"]):::uptodate
x44f0a0e2845803f1(["l_travel_times"]):::uptodate --> x6b9c58fabbe5d5ac(["d_rehab_kriged_for_agg"]):::uptodate
x2561c370ea702599["remoteness_files"]:::uptodate --> x786302e79631eb8d(["l_remoteness_dlist"]):::uptodate
x140f4dcc1344002d(["d_sa1_2016_acute_time"]):::uptodate --> x2138cd44d3ad5669(["dl_file_2016_SA1"]):::uptodate
x17e7029742198b85(["d_sa1_2016_rehab_time"]):::uptodate --> x2138cd44d3ad5669(["dl_file_2016_SA1"]):::uptodate
x786302e79631eb8d(["l_remoteness_dlist"]):::uptodate --> x2138cd44d3ad5669(["dl_file_2016_SA1"]):::uptodate
xe97fee2eed97fb6f(["l_seifa_dlist"]):::uptodate --> x2138cd44d3ad5669(["dl_file_2016_SA1"]):::uptodate
x235ba1189d5ce124(["d_sa2_2016_acute_time"]):::uptodate --> x6daca8a7a6cdef63(["dl_file_2016_SA2"]):::uptodate
xd957b08abae86042(["d_sa2_2016_rehab_time"]):::uptodate --> x6daca8a7a6cdef63(["dl_file_2016_SA2"]):::uptodate
x786302e79631eb8d(["l_remoteness_dlist"]):::uptodate --> x6daca8a7a6cdef63(["dl_file_2016_SA2"]):::uptodate
xe97fee2eed97fb6f(["l_seifa_dlist"]):::uptodate --> x6daca8a7a6cdef63(["dl_file_2016_SA2"]):::uptodate
x3556cb9010710414(["d_acute_kriged_raster"]):::uptodate --> x3a50328cd8c705d1(["app_raster"]):::uptodate
x5fb43595e3d9b43d(["d_rehab_kriged_raster"]):::uptodate --> x3a50328cd8c705d1(["app_raster"]):::uptodate
x85ecf85bc3a92095(["qld_locations_file"]):::uptodate --> x21879eefff325d9d(["d_ids"]):::uptodate
xcfed681661a25666(["d_acute_kriged_for_agg"]):::uptodate --> x3c98c5bdbae2f835(["d_sa2_2021_acute_time"]):::uptodate
x6b9c58fabbe5d5ac(["d_rehab_kriged_for_agg"]):::uptodate --> x0044d423c4129aa5(["d_sa1_2021_rehab_time"]):::uptodate
xcfed681661a25666(["d_acute_kriged_for_agg"]):::uptodate --> x235ba1189d5ce124(["d_sa2_2016_acute_time"]):::uptodate
x38420866eda88fe0(["qas_locations_file"]):::uptodate --> x05f9b2be184bafe8(["d_qas_locations"]):::uptodate
x44f0a0e2845803f1(["l_travel_times"]):::uptodate --> x89a28cd7ac7b6784(["app_locations_and_times"]):::uptodate
x6b9c58fabbe5d5ac(["d_rehab_kriged_for_agg"]):::uptodate --> xd957b08abae86042(["d_sa2_2016_rehab_time"]):::uptodate
x140f4dcc1344002d(["d_sa1_2016_acute_time"]):::uptodate --> x8e785e1ce1247c8f(["app_polygons"]):::uptodate
x17e7029742198b85(["d_sa1_2016_rehab_time"]):::uptodate --> x8e785e1ce1247c8f(["app_polygons"]):::uptodate
x235ba1189d5ce124(["d_sa2_2016_acute_time"]):::uptodate --> x8e785e1ce1247c8f(["app_polygons"]):::uptodate
xd957b08abae86042(["d_sa2_2016_rehab_time"]):::uptodate --> x8e785e1ce1247c8f(["app_polygons"]):::uptodate
x786302e79631eb8d(["l_remoteness_dlist"]):::uptodate --> x8e785e1ce1247c8f(["app_polygons"]):::uptodate
xe97fee2eed97fb6f(["l_seifa_dlist"]):::uptodate --> x8e785e1ce1247c8f(["app_polygons"]):::uptodate
x9f6a140e9d41e9f8(["drive_times_files_files"]):::uptodate --> xf635f181b39a30ce["drive_times_files"]:::uptodate
x0f8649c73df6fd69(["d_centre_coords"]):::uptodate --> xa9ea2a04c05eda30(["inset_maps"]):::uptodate
x6e986cb21b65ebaa(["d_icons"]):::uptodate --> xa9ea2a04c05eda30(["inset_maps"]):::uptodate
x502e395192be8056(["plotting_utils"]):::uptodate --> xa9ea2a04c05eda30(["inset_maps"]):::uptodate
xce1d319486efc243(["vis_shapes"]):::uptodate --> xa9ea2a04c05eda30(["inset_maps"]):::uptodate
x831ee0369a2a91ad(["d_input_shapes"]):::uptodate --> x5fb43595e3d9b43d(["d_rehab_kriged_raster"]):::uptodate
x44f0a0e2845803f1(["l_travel_times"]):::uptodate --> x5fb43595e3d9b43d(["d_rehab_kriged_raster"]):::uptodate
x15acd9b064c909c4(["d_drive_times"]):::uptodate --> x9cf1da0d89b39050(["d_future_gold_and_cairns"]):::uptodate
x24fc4b6a7e38688b(["d_island_rehab_times"]):::uptodate --> x9cf1da0d89b39050(["d_future_gold_and_cairns"]):::uptodate
xcfed681661a25666(["d_acute_kriged_for_agg"]):::uptodate --> x8ef184c44b3c9287(["d_sa2_2011_acute_time"]):::uptodate
x7ac64c2657a7a0da(["itraqi_list"]):::uptodate --> x6e1c1296adb53f85(["index_palette_table"]):::uptodate
x15acd9b064c909c4(["d_drive_times"]):::uptodate --> xe85c83d45448032e(["d_platinum"]):::uptodate
x24fc4b6a7e38688b(["d_island_rehab_times"]):::uptodate --> xe85c83d45448032e(["d_platinum"]):::uptodate
x23fe5c9d10c5ba8b(["d_sa1_2011_acute_time"]):::uptodate --> xb03e5e3c90f2da7c(["dl_file_2011_SA1"]):::uptodate
xdd6e281ffd7abb1e(["d_sa1_2011_rehab_time"]):::uptodate --> xb03e5e3c90f2da7c(["dl_file_2011_SA1"]):::uptodate
x786302e79631eb8d(["l_remoteness_dlist"]):::uptodate --> xb03e5e3c90f2da7c(["dl_file_2011_SA1"]):::uptodate
xe97fee2eed97fb6f(["l_seifa_dlist"]):::uptodate --> xb03e5e3c90f2da7c(["dl_file_2011_SA1"]):::uptodate
x8ef184c44b3c9287(["d_sa2_2011_acute_time"]):::uptodate --> xf1ace82ee36a732e(["dl_file_2011_SA2"]):::uptodate
xb1cba206a277ab8b(["d_sa2_2011_rehab_time"]):::uptodate --> xf1ace82ee36a732e(["dl_file_2011_SA2"]):::uptodate
x786302e79631eb8d(["l_remoteness_dlist"]):::uptodate --> xf1ace82ee36a732e(["dl_file_2011_SA2"]):::uptodate
xe97fee2eed97fb6f(["l_seifa_dlist"]):::uptodate --> xf1ace82ee36a732e(["dl_file_2011_SA2"]):::uptodate
x15acd9b064c909c4(["d_drive_times"]):::uptodate --> x7115567ab47c0786(["d_future_gold"]):::uptodate
x24fc4b6a7e38688b(["d_island_rehab_times"]):::uptodate --> x7115567ab47c0786(["d_future_gold"]):::uptodate
xf635f181b39a30ce["drive_times_files"]:::uptodate --> x15acd9b064c909c4(["d_drive_times"]):::uptodate
x831ee0369a2a91ad(["d_input_shapes"]):::uptodate --> x3556cb9010710414(["d_acute_kriged_raster"]):::uptodate
x44f0a0e2845803f1(["l_travel_times"]):::uptodate --> x3556cb9010710414(["d_acute_kriged_raster"]):::uptodate
x7ac64c2657a7a0da(["itraqi_list"]):::uptodate --> x9dc6b63955863bba(["iTRAQI_legends"]):::uptodate
x502e395192be8056(["plotting_utils"]):::uptodate --> x9dc6b63955863bba(["iTRAQI_legends"]):::uptodate
x7ac64c2657a7a0da(["itraqi_list"]):::uptodate --> x77bfd070d53e23a1(["iTRAQI_rehab_maps"]):::uptodate
x502e395192be8056(["plotting_utils"]):::uptodate --> x77bfd070d53e23a1(["iTRAQI_rehab_maps"]):::uptodate
x7ac64c2657a7a0da(["itraqi_list"]):::uptodate --> x15005b247f2f4537(["iTRAQI_sa1_map"]):::uptodate
x502e395192be8056(["plotting_utils"]):::uptodate --> x15005b247f2f4537(["iTRAQI_sa1_map"]):::uptodate
x3556cb9010710414(["d_acute_kriged_raster"]):::uptodate --> x7ac64c2657a7a0da(["itraqi_list"]):::uptodate
x5fb43595e3d9b43d(["d_rehab_kriged_raster"]):::uptodate --> x7ac64c2657a7a0da(["itraqi_list"]):::uptodate
xd6673f821e7b0465(["palette_file"]):::uptodate --> x7ac64c2657a7a0da(["itraqi_list"]):::uptodate
xce1d319486efc243(["vis_shapes"]):::uptodate --> x7ac64c2657a7a0da(["itraqi_list"]):::uptodate
x502e395192be8056(["plotting_utils"]):::uptodate --> x2d0c593ea638a740(["town_locations_map"]):::uptodate
xce1d319486efc243(["vis_shapes"]):::uptodate --> x2d0c593ea638a740(["town_locations_map"]):::uptodate
xcfed681661a25666(["d_acute_kriged_for_agg"]):::uptodate --> xae07be3d7a5496f6(["d_sa1_2021_acute_time"]):::uptodate
x6b9c58fabbe5d5ac(["d_rehab_kriged_for_agg"]):::uptodate --> xb1cba206a277ab8b(["d_sa2_2011_rehab_time"]):::uptodate
xcfed681661a25666(["d_acute_kriged_for_agg"]):::uptodate --> x140f4dcc1344002d(["d_sa1_2016_acute_time"]):::uptodate
xae07be3d7a5496f6(["d_sa1_2021_acute_time"]):::uptodate --> x670286573a6e737f(["dl_file_2021_SA1"]):::uptodate
x0044d423c4129aa5(["d_sa1_2021_rehab_time"]):::uptodate --> x670286573a6e737f(["dl_file_2021_SA1"]):::uptodate
x3c98c5bdbae2f835(["d_sa2_2021_acute_time"]):::uptodate --> x4061f2460c5f975e(["dl_file_2021_SA2"]):::uptodate
x3d249e379cd8c8bf(["d_sa2_2021_rehab_time"]):::uptodate --> x4061f2460c5f975e(["dl_file_2021_SA2"]):::uptodate
x6aff51c44af250ba(["remoteness_files_files"]):::uptodate --> x2561c370ea702599["remoteness_files"]:::uptodate
x6ea9bfcc13ed2276(["acute_times_file"]):::uptodate --> x0085422ba003396c(["d_acute"]):::uptodate
x6b9c58fabbe5d5ac(["d_rehab_kriged_for_agg"]):::uptodate --> x17e7029742198b85(["d_sa1_2016_rehab_time"]):::uptodate
xcfed681661a25666(["d_acute_kriged_for_agg"]):::uptodate --> x23fe5c9d10c5ba8b(["d_sa1_2011_acute_time"]):::uptodate
x6b9c58fabbe5d5ac(["d_rehab_kriged_for_agg"]):::uptodate --> x3d249e379cd8c8bf(["d_sa2_2021_rehab_time"]):::uptodate
x15acd9b064c909c4(["d_drive_times"]):::uptodate --> x03e84a931f36fd6b(["d_silver"]):::uptodate
x24fc4b6a7e38688b(["d_island_rehab_times"]):::uptodate --> x03e84a931f36fd6b(["d_silver"]):::uptodate
x21879eefff325d9d(["d_ids"]):::uptodate --> x24fc4b6a7e38688b(["d_island_rehab_times"]):::uptodate
x502e395192be8056(["plotting_utils"]):::uptodate --> x8c11cc2ca92605fc(["major_regional_services_map"]):::uptodate
xce1d319486efc243(["vis_shapes"]):::uptodate --> x8c11cc2ca92605fc(["major_regional_services_map"]):::uptodate
x7115567ab47c0786(["d_future_gold"]):::uptodate --> x95cfa4f70fea9a21(["l_all_drive_times"]):::uptodate
x9cf1da0d89b39050(["d_future_gold_and_cairns"]):::uptodate --> x95cfa4f70fea9a21(["l_all_drive_times"]):::uptodate
x5c8a4b58701f0195(["d_gold"]):::uptodate --> x95cfa4f70fea9a21(["l_all_drive_times"]):::uptodate
xe85c83d45448032e(["d_platinum"]):::uptodate --> x95cfa4f70fea9a21(["l_all_drive_times"]):::uptodate
x03e84a931f36fd6b(["d_silver"]):::uptodate --> x95cfa4f70fea9a21(["l_all_drive_times"]):::uptodate
x7ac64c2657a7a0da(["itraqi_list"]):::uptodate --> xd76909fa06094073(["iTRAQI_tables"]):::uptodate
x502e395192be8056(["plotting_utils"]):::uptodate --> x70fc135bdd27feb8(["qas_map"]):::uptodate
xce1d319486efc243(["vis_shapes"]):::uptodate --> x70fc135bdd27feb8(["qas_map"]):::uptodate
x5f5497709c5ef739["seifa_files"]:::uptodate --> xe97fee2eed97fb6f(["l_seifa_dlist"]):::uptodate
x831ee0369a2a91ad(["d_input_shapes"]):::uptodate --> xcfed681661a25666(["d_acute_kriged_for_agg"]):::uptodate
x44f0a0e2845803f1(["l_travel_times"]):::uptodate --> xcfed681661a25666(["d_acute_kriged_for_agg"]):::uptodate
x8e785e1ce1247c8f(["app_polygons"]):::uptodate --> xce1d319486efc243(["vis_shapes"]):::uptodate
x0f8649c73df6fd69(["d_centre_coords"]):::uptodate --> xce1d319486efc243(["vis_shapes"]):::uptodate
x6e986cb21b65ebaa(["d_icons"]):::uptodate --> xce1d319486efc243(["vis_shapes"]):::uptodate
x21879eefff325d9d(["d_ids"]):::uptodate --> xce1d319486efc243(["vis_shapes"]):::uptodate
x831ee0369a2a91ad(["d_input_shapes"]):::uptodate --> xce1d319486efc243(["vis_shapes"]):::uptodate
x05f9b2be184bafe8(["d_qas_locations"]):::uptodate --> xce1d319486efc243(["vis_shapes"]):::uptodate
xc6a9168a5e03bc7c(["d_rsq_locations"]):::uptodate --> xce1d319486efc243(["vis_shapes"]):::uptodate
x0085422ba003396c(["d_acute"]):::uptodate --> x44f0a0e2845803f1(["l_travel_times"]):::uptodate
x15acd9b064c909c4(["d_drive_times"]):::uptodate --> x44f0a0e2845803f1(["l_travel_times"]):::uptodate
x24fc4b6a7e38688b(["d_island_rehab_times"]):::uptodate --> x44f0a0e2845803f1(["l_travel_times"]):::uptodate
x95cfa4f70fea9a21(["l_all_drive_times"]):::uptodate --> x44f0a0e2845803f1(["l_travel_times"]):::uptodate
end
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