CWL examples

This repository contains example workflows in CWL.

Overview

Convert output of type Directory into input of type File array

• wf_dir_to_array.cwl: Source = Directory, Sink = File[], no scatter
• wf_dir_to_array_scatter.cwl: Source = Directory, Sink = File[], but tool in Sink takes File. Solution 1 = nested workflow (maybe not the best practice).

Convert output of type File[] into input of type Directory

• ls_dir.cwl: Tool which takes file array as input and converts this to a Directory before execution.

License

Apache-2.0