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ResearchObject · Jan 8, 2024 · 48cc409 · 48cc409
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diff --git a/docs/in-use/datalake.md b/docs/in-use/datalake.md
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+---
+title: KEOD Data Lake
+parent: RO-Crate In Use
+---
+<!--
+   Copyright 2023-2024 RO-Crate contributors
+   <https://github.com/ResearchObject/ro-crate/graphs/contributors>
+
+   Licensed under the Apache License, Version 2.0 (the "License");
+   you may not use this file except in compliance with the License.
+   You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.
+-->
+
+# KEOD Data Lake
+
+
+Knowledge Enhanced Digital Objects ([KEOD](https://github.com/luoyu357/KEDODataLake)) is an experimental approach of building a data lake using a combination of knowledge graphs, RO-Crate and PID records. 
+
+A KEDO PID is a Handle that identifies a KEDO Object, described using a KEDO RO-Crate. This crate again has \emph{internal RO-Crate}s as parts, which records a combination of _Features_ and _Insights_. The distinction is that features are mainly fixed at digital object creation and considered directly describing the object's nature, while insights can be discovered later from further processing and linkage.
+
+Files in a KEDO RO-Crate are stored locally, and each recorded with a Handle PID within the crate. In this KEOD setup of multiple graphs then form a single knowledge unit.
+
+## Resources
+
+* Yu Luo (2022): [Knowledge enhanced digital objects](https://www.proquest.com/docview/2763290077) (Doctoral dissertation, Indiana University)
+* Conference paper: <https://doi.org/10.1109/CCGridW59191.2023.00064>
+* Source: <https://github.com/luoyu357/KEDODataLake>
+
+<!--
+[![datalake logo](../assets/img/datalake.svg)](https://datalake.org/)
+
+[datalake](https://reliance.rohub.org/) (EXAMPLE-ACRONYM), is a...
+
+datalake uses RO-Crate for ... as ....
+
+datalake works with Project X, .....
+
+![datalake screenshot with RO-Crate(../assets/img/datalake-screenshot.png)
+
+
+## RO-Crate in datalake
+
+(Show practically how RO-Crate is used, link to profile of RO-Crate, etc.)
+
+The datalake API supports [RO-Crate export](http://datalake.org/docs/ro-crate) as...
+
+datalake also plans to do...
+
+datalake:
+```
+curl -H "Accept: application/ld+json" https://datalake.com/ro-crate/a72f314d
+
+{
+  "@context": { … },
+  "@graph": [
+   …
+    {
+      "@id": "./",
+      "hasPart": […],
+      "@type": "Dataset",
+    }
+   …
+}
+```
+
+
+## Resources
+
+* [datalake Homepage](https://datalake.org/)
+* [datalake documentation](https://datalake.org/docs/)
+* [RO-Crate profile for datalake](https://datalake.org/crate-profile)
+* [datalake Tutorials](https://datalake.org/docs/tutorial)
+* [datalake presentation](http://datalake.org/)
+
+## Publications
+
+Alice Land, Bob Bunny (2020):  
+**datalake and RO-Crate**.  
+_datalake Journal_ **0**(1)
+<https://doi.org/10.1234/datalake>  
+[[preprint](http://datalake.com/preprint.pdf)]
+
+-->
diff --git a/docs/in-use/desci.md b/docs/in-use/desci.md
@@ -0,0 +1,84 @@
+---
+title: DeSci Nodes
+parent: RO-Crate In Use
+---
+<!--
+   Copyright 2019-2024 RO-Crate contributors
+   <https://github.com/ResearchObject/ro-crate/graphs/contributors>
+
+   Licensed under the Apache License, Version 2.0 (the "License");
+   you may not use this file except in compliance with the License.
+   You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.
+-->
+
+# DeSci Nodes
+
+The [DeSci Nodes](https://docs.desci.com/) system has been developed by the [DeSci foundation](https://www.descifoundation.org/), where [dPID](https://www.dpid.org/) (distibuted Persistent Identifier) act  as an overlay of the Interplanetary File System (IPFS).
+
+Users can interact with the DeSci platform for building and publishing Research Objects, and the [DeSci metadata](https://docs.desci.com/learn/open-state-repository/metadata) are exposed as a [detached RO-Crate](https://www.researchobject.org/ro-crate/1.2-DRAFT/structure.html\#detached-ro-crate) with IPFS references (see [example dPID](https://beta.dpid.org/46?jsonld)). 
+
+DeSci Nodes have documented a [FAIR Implementation Profile](https://docs.desci.com/learn/fair-data/fair-compliance/desci-nodes-fip) (FIP) documenting compliance with FAIR principles. 
+
+<!--
+[![desci logo](../assets/img/desci.svg)](https://desci.org/)
+
+[desci](https://reliance.rohub.org/) (EXAMPLE-ACRONYM), is a...
+
+desci uses RO-Crate for ... as ....
+
+desci works with Project X, .....
+
+![desci screenshot with RO-Crate(../assets/img/desci-screenshot.png)
+
+
+## RO-Crate in desci
+
+(Show practically how RO-Crate is used, link to profile of RO-Crate, etc.)
+
+The desci API supports [RO-Crate export](http://desci.org/docs/ro-crate) as...
+
+desci also plans to do...
+
+desci:
+```
+curl -H "Accept: application/ld+json" https://desci.com/ro-crate/a72f314d
+
+{
+  "@context": { … },
+  "@graph": [
+   …
+    {
+      "@id": "./",
+      "hasPart": […],
+      "@type": "Dataset",
+    }
+   …
+}
+```
+
+
+## Resources
+
+* [desci Homepage](https://desci.org/)
+* [desci documentation](https://desci.org/docs/)
+* [RO-Crate profile for desci](https://desci.org/crate-profile)
+* [desci Tutorials](https://desci.org/docs/tutorial)
+* [desci presentation](http://desci.org/)
+
+## Publications
+
+Alice Land, Bob Bunny (2020):  
+**desci and RO-Crate**.  
+_desci Journal_ **0**(1)
+<https://doi.org/10.1234/desci>  
+[[preprint](http://desci.com/preprint.pdf)]
+
+-->
diff --git a/docs/in-use/wildlive.md b/docs/in-use/wildlive.md
@@ -0,0 +1,91 @@
+---
+title: Wildlive portal
+parent: RO-Crate In Use
+---
+<!--
+   Copyright 2019-2024 RO-Crate contributors
+   <https://github.com/ResearchObject/ro-crate/graphs/contributors>
+
+   Licensed under the Apache License, Version 2.0 (the "License");
+   you may not use this file except in compliance with the License.
+   You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.
+-->
+
+# Senckenberg Wildlive data portal
+
+Senckenberg's [Wildlive data portal](https://wildlive.senckenberg.de/), is a repository and analysis platform for biodiversity monitoring. 
+
+Using [FAIR Signposting](https://signposting.org/FAIR/), the images from cameras monitoring wildlife are also navigatable as FAIR Digital Objects using RO-Crate to expose the  metadata. 
+
+The portal uses [detached RO-Crate](https://www.researchobject.org/ro-crate/1.2-DRAFT/structure.html#detached-ro-crate) as the images are served over separate API calls for seaprate digital objects. At the same time, the use of Handles for persistent identifiers have been explored, as a demonstrator of a hybrid Web/Handle FDO based on the .
+
+## Resources
+
+* Slides: https://slides.com/soilandreyes/2023-11-13-bh2023-fdo#/3
+* Biohackathon preprint: https://github.com/ResearchObject/bh2023-enabling-fair-digital-objects/blob/main/paper/paper.md
+* Example handle: https://hdl.handle.net/21.T11998/wildlive.7df91e6d148a386cc674
+* Example detached RO-Crate: https://wildlive.senckenberg.de/api/call?objectId=wildlive/7df91e6d148a386cc674&method=getAsROCrate
+
+<!--
+[![wildlive logo](../assets/img/wildlive.svg)](https://wildlive.org/)
+
+[wildlive](https://reliance.rohub.org/) (EXAMPLE-ACRONYM), is a...
+
+wildlive uses RO-Crate for ... as ....
+
+wildlive works with Project X, .....
+
+![wildlive screenshot with RO-Crate(../assets/img/wildlive-screenshot.png)
+
+
+## RO-Crate in wildlive
+
+(Show practically how RO-Crate is used, link to profile of RO-Crate, etc.)
+
+The wildlive API supports [RO-Crate export](http://wildlive.org/docs/ro-crate) as...
+
+wildlive also plans to do...
+
+wildlive:
+```
+curl -H "Accept: application/ld+json" https://wildlive.com/ro-crate/a72f314d
+
+{
+  "@context": { … },
+  "@graph": [
+   …
+    {
+      "@id": "./",
+      "hasPart": […],
+      "@type": "Dataset",
+    }
+   …
+}
+```
+
+
+## Resources
+
+* [wildlive Homepage](https://wildlive.org/)
+* [wildlive documentation](https://wildlive.org/docs/)
+* [RO-Crate profile for wildlive](https://wildlive.org/crate-profile)
+* [wildlive Tutorials](https://wildlive.org/docs/tutorial)
+* [wildlive presentation](http://wildlive.org/)
+
+## Publications
+
+Alice Land, Bob Bunny (2020):  
+**wildlive and RO-Crate**.  
+_wildlive Journal_ **0**(1)
+<https://doi.org/10.1234/wildlive>  
+[[preprint](http://wildlive.com/preprint.pdf)]
+
+-->
diff --git a/docs/in-use/zbmed.md b/docs/in-use/zbmed.md
@@ -0,0 +1,93 @@
+---
+title: ZBMed SemTec web pages
+parent: RO-Crate In Use
+---
+<!--
+   Copyright 2019-2024 RO-Crate contributors
+   <https://github.com/ResearchObject/ro-crate/graphs/contributors>
+
+   Licensed under the Apache License, Version 2.0 (the "License");
+   you may not use this file except in compliance with the License.
+   You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.
+-->
+
+# ZBMed
+
+The [Semantic Technologies](https://zbmed-semtec.github.io/) (SemTec) team in [ZB MED](https://www.zbmed.de/en/) uses GitHub pages to share research projects and corresponding research artefacts/outcomes.
+
+Using [FAIR Signposting](https://signposting.org/FAIR/), Bioschemas and RO-Crate this is an example of a lightweight deployment of FAIR Digital Objects (FDOs). 
+
+This work was supported by a [FAIR-IMPACT support action](https://fair-impact.eu/1st-open-call-support-closed) and developed further at the ELIXIR Biohackathon 2023.
+
+
+## Resources
+
+* Slides:  https://slides.com/soilandreyes/2023-11-13-bh2023-fdo#/3
+* Biohackathon preprint: https://github.com/ResearchObject/bh2023-enabling-fair-digital-objects/blob/main/paper/paper.md
+* Example page w/ RO-Crate: https://zbmed-semtec.github.io/projects/2022_maSMP/
+* Example RO-Crate: https://zbmed-semtec.github.io/metadata/projects/2022_maSMP/ro-crate-metadata.json
+* Example RO-Crate preview: https://zbmed-semtec.github.io/metadata/projects/2022_maSMP/ro-crate-preview.html
+
+<!--
+[![zbmed logo](../assets/img/zbmed.svg)](https://zbmed.org/)
+
+[zbmed](https://reliance.rohub.org/) (EXAMPLE-ACRONYM), is a...
+
+zbmed uses RO-Crate for ... as ....
+
+zbmed works with Project X, .....
+
+![zbmed screenshot with RO-Crate(../assets/img/zbmed-screenshot.png)
+
+
+## RO-Crate in zbmed
+
+(Show practically how RO-Crate is used, link to profile of RO-Crate, etc.)
+
+The zbmed API supports [RO-Crate export](http://zbmed.org/docs/ro-crate) as...
+
+zbmed also plans to do...
+
+zbmed:
+```
+curl -H "Accept: application/ld+json" https://zbmed.com/ro-crate/a72f314d
+
+{
+  "@context": { … },
+  "@graph": [
+   …
+    {
+      "@id": "./",
+      "hasPart": […],
+      "@type": "Dataset",
+    }
+   …
+}
+```
+
+
+## Resources
+
+* [zbmed Homepage](https://zbmed.org/)
+* [zbmed documentation](https://zbmed.org/docs/)
+* [RO-Crate profile for zbmed](https://zbmed.org/crate-profile)
+* [zbmed Tutorials](https://zbmed.org/docs/tutorial)
+* [zbmed presentation](http://zbmed.org/)
+
+## Publications
+
+Alice Land, Bob Bunny (2020):  
+**zbmed and RO-Crate**.  
+_zbmed Journal_ **0**(1)
+<https://doi.org/10.1234/zbmed>  
+[[preprint](http://zbmed.com/preprint.pdf)]
+
+-->