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Added ttprocessing
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RonaldVisser committed Mar 5, 2024
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18 changes: 15 additions & 3 deletions _site/index.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

<meta name="author" content="Ronald Visser">
<meta name="dcterms.date" content="2024-03-01">
<meta name="dcterms.date" content="2024-03-05">

<title>Dendrochronology and R - R-packages for dendrochronology</title>
<style>
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<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">March 1, 2024</p>
<p class="date">March 5, 2024</p>
</div>
</div>

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<td><a href="https://github.com/cszang/treeclim">GitHub</a></td>
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<td>ttprocessing</td>
<td>For processing the Tree Talker data. It implements the procedures described in the TT+ manual. It allows for converting the raw data into physical quantities and calculating the sap flow from raw temperatures recorded by the probes. It provides some plotting functions and a graphical user interface <span class="citation" data-cites="kabala2022 kabala2024">(<a href="#ref-kabala2022" role="doc-biblioref">Kabala, Niccoli and Battipaglia 2022</a>; <a href="#ref-kabala2024" role="doc-biblioref">Kabala, Niccoli and Battipaglia 2024</a>)</span>.</td>
<td></td>
<td><a href="https://github.com/jpkabala96/ttprocessing">GitHub</a></td>
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<td>WIAD</td>
<td>wiad: Wood Image Analysis and Dataset provides a user-friendly interface to digitize wood imagery such as tree ring scans. The package offers a web-based application that the user can run locally from their computers to analyze wood characteristics <span class="citation" data-cites="rademacher">(<a href="#ref-rademacher" role="doc-biblioref">Rademacher et al. n.d.</a>)</span>.</td>
<td><a href="https://cran.r-project.org/web/packages/wiad/index.html">CRAN</a></td>
<td><a href="https://github.com/bnasr/wiad/">GitHub</a></td>
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<td>xRing</td>
<td>Identify and Measure Tree Rings on X-Ray Micro-Density Profiles. This package contains functions to identify tree-ring borders based on X-ray micro-density profiles and a Graphical User Interface (GUI) to visualize density profiles and correct tree-ring borders <span class="citation" data-cites="campelo2019">(<a href="#ref-campelo2019" role="doc-biblioref">Campelo, Mayer and Grabner 2019</a>)</span>.</td>
<td><a href="https://cran.r-project.org/web/packages/xRing/index.html">CRAN</a></td>
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<div id="ref-jevsenak2018" class="csl-entry" role="doc-biblioentry">
Jevšenak, J and Levanič, T. 2018 dendroTools: R package for studying linear and nonlinear responses between tree-rings and daily environmental data. <em>Dendrochronologia</em> 48: 32–39. DOI: https://doi.org/<a href="https://doi.org/10.1016/j.dendro.2018.01.005">10.1016/j.dendro.2018.01.005</a>.
</div>
<div id="ref-kabala2022" class="csl-entry" role="doc-biblioentry">
Kabala, JP, Niccoli, F and Battipaglia, G. 2022 <em>2022 IEEE workshop on metrology for agriculture and forestry (MetroAgriFor)</em>. In: November 2022. pp. 70–74. DOI: https://doi.org/<a href="https://doi.org/10.1109/MetroAgriFor55389.2022.9964512">10.1109/MetroAgriFor55389.2022.9964512</a>.
</div>
<div id="ref-kabala2024" class="csl-entry" role="doc-biblioentry">
Kabala, JP, Niccoli, F and Battipaglia, G. 2024 Update to ttprocessing: The r-package to handle the TreeTalker monitoring data. <em>Dendrochronologia</em> 84: 126167. DOI: https://doi.org/<a href="https://doi.org/10.1016/j.dendro.2024.126167">10.1016/j.dendro.2024.126167</a>.
</div>
<div id="ref-lara2018" class="csl-entry" role="doc-biblioentry">
Lara, W, Bogino, S and Bravo, F. 2018 Multilevel analysis of dendroclimatic series with the R-package BIOdry. <em>PLOS ONE</em> 13(5): e0196923. DOI: https://doi.org/<a href="https://doi.org/10.1371/journal.pone.0196923">10.1371/journal.pone.0196923</a>.
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</url>
<url>
<loc>https://ronaldvisser.github.io/Dendro_R/index.html</loc>
<lastmod>2024-03-01T13:14:32.691Z</lastmod>
<lastmod>2024-03-05T07:48:38.318Z</lastmod>
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+-----------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------+---------------------------------------------------------------+
| treeclim | Bootstrapped response and correlation functions, seasonal correlations and evaluation of reconstruction skills for use in dendroclimatology and dendroecology [@zang2015]. | [CRAN](https://cran.r-project.org/web/packages/treeclim/index.html) | [GitHub](https://github.com/cszang/treeclim) |
+-----------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------+---------------------------------------------------------------+
| ttprocessing | For processing the Tree Talker data. It implements the procedures described in the TT+ manual. It allows for converting the raw data into physical quantities and calculating the sap flow from raw temperatures recorded by the probes. It provides some plotting functions and a graphical user interface [@kabala2022; @kabala2024]. | | [GitHub](https://github.com/jpkabala96/ttprocessing) |
+-----------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------+---------------------------------------------------------------+
| WIAD | wiad: Wood Image Analysis and Dataset provides a user-friendly interface to digitize wood imagery such as tree ring scans. The package offers a web-based application that the user can run locally from their computers to analyze wood characteristics [@rademacher]. | [CRAN](https://cran.r-project.org/web/packages/wiad/index.html) | [GitHub](https://github.com/bnasr/wiad/) |
+-----------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------+---------------------------------------------------------------+
| xRing | Identify and Measure Tree Rings on X-Ray Micro-Density Profiles. This package contains functions to identify tree-ring borders based on X-ray micro-density profiles and a Graphical User Interface (GUI) to visualize density profiles and correct tree-ring borders [@campelo2019]. | [CRAN](https://cran.r-project.org/web/packages/xRing/index.html) | [GitHub](https://github.com/cran/xRing){.uri} |
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24 changes: 24 additions & 0 deletions references.bib
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note = {Publisher: Public Library of Science},
langid = {en}
}

@inproceedings{kabala2022,
title = {2022 IEEE Workshop on Metrology for Agriculture and Forestry (MetroAgriFor)},
author = {Kabala, Jerzy Piotr and Niccoli, Francesco and Battipaglia, Giovanna},
year = {2022},
month = {11},
date = {2022-11},
pages = {70--74},
doi = {10.1109/MetroAgriFor55389.2022.9964512},
url = {https://ieeexplore.ieee.org/abstract/document/9964512?casa_token=8rCZKkbECnYAAAAA:XAfwYWG2TDUMXgGfqckYTUbubm0taKGYQ7h-zZ5FvOyT6-Y3SxK9b5hbsgom6dJDTYLoc0r6KA_yXw}
}

@article{kabala2024,
title = {Update to ttprocessing: the R-package to handle the TreeTalker monitoring data},
author = {Kabala, J. P. and Niccoli, F. and Battipaglia, G.},
year = {2024},
month = {04},
date = {2024-04-01},
journal = {Dendrochronologia},
pages = {126167},
volume = {84},
doi = {10.1016/j.dendro.2024.126167},
url = {https://www.sciencedirect.com/science/article/pii/S1125786524000043}
}

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