Automate Case Details and Fields Preselection for Influenza Cases #13184 #16883
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# This workflow will build a Java project with Maven | |
# For more information see: | |
# https://help.github.com/actions/language-and-framework-guides/building-and-testing-java-with-maven | |
name: Java CI with Maven | |
env: | |
JAVA: 17 | |
PRIVILEGED_RUN: ${{ (github.event_name == 'push' && github.ref == 'refs/heads/development') | |
|| github.event.pull_request.head.repo.full_name == github.repository }} | |
CODEQL_LANGUAGES: 'java' # FIXME(@JonasCir) add 'javascript' | |
on: | |
push: | |
branches: [ development, master, hotfix* ] | |
pull_request: | |
branches: [ development, hotfix* ] | |
workflow_dispatch: # run it manually from the GH Actions web console | |
schedule: | |
- cron: '35 1 * * 0' | |
jobs: | |
ci: | |
name: SORMAS CI | |
runs-on: ubuntu-latest | |
permissions: | |
security-events: write | |
steps: | |
- name: Checkout repository (with token) | |
# Check if PR results from the repository: if yes, we have access to the secrets. | |
# The token is only needed for privileged actions from within the repo, so no need | |
# to make it available on 3rd party PRs | |
if: ${{ fromJSON(env.PRIVILEGED_RUN) }} | |
uses: actions/checkout@v3 | |
with: | |
token: ${{ secrets.SORMAS_VITAGROUP_CI_TOKEN }} | |
- name: Checkout repository (without token) | |
# Check if PR results from a fork: if yes, we cannot access the token. | |
# The token is only needed for privileged actions from within the | |
# repo, so no need to make it available on 3rd party PRs | |
if: ${{ !fromJSON(env.PRIVILEGED_RUN) }} | |
uses: actions/checkout@v3 | |
- name: Initialize CodeQL | |
uses: github/codeql-action/init@v2 | |
with: | |
languages: ${{ env.CODEQL_LANGUAGES }} | |
- name: Set up JDK ${{ env.JAVA }} | |
uses: actions/setup-java@v3 | |
with: | |
java-version: ${{ env.JAVA }} | |
distribution: 'zulu' | |
- name: Cache Maven packages | |
# Check if PR results from the repository: if yes, it is safe to cache dependencies. | |
# This is to keep us safe from cache poisoning through 3rd party PRs. | |
if: ${{ fromJSON(env.PRIVILEGED_RUN) }} | |
uses: actions/cache@v3 | |
with: | |
path: ~/.m2 | |
key: ${{ runner.os }}-java-${{ env.JAVA }}-m2-${{ hashFiles('**/pom.xml') }} | |
restore-keys: ${{ runner.os }}-java-${{ env.JAVA }}-m2 | |
- name: Cache SonarCloud packages | |
# Check if PR results from the repository: if yes, it is safe to cache dependencies. | |
# This is to keep us safe from cache poisoning through 3rd party PRs. | |
if: ${{ fromJSON(env.PRIVILEGED_RUN) }} | |
uses: actions/cache@v3 | |
with: | |
path: ~/.sonar/cache | |
key: ${{ runner.os }}-sonar | |
restore-keys: ${{ runner.os }}-sonar | |
- name: Run mvn verify and sonar analysis | |
# FIXME(@JonasCir) see https://github.com/sormas-foundation/SORMAS-Project/issues/3730#issuecomment-745165678 | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # Needed to get PR information, if any | |
SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
working-directory: ./sormas-base | |
run: mvn -B -ntp verify org.sonarsource.scanner.maven:sonar-maven-plugin:sonar -Dsonar.projectKey=SORMAS-Project | |
- name: Comment with SonarCloud analysis | |
uses: actions/github-script@v6 | |
if: github.event_name == 'pull_request' | |
with: | |
github-token: ${{ secrets.SORMAS_VITAGROUP_CI_TOKEN }} | |
script: | | |
github.rest.issues.createComment({ | |
issue_number: context.issue.number, | |
owner: context.repo.owner, | |
repo: context.repo.repo, | |
body: `SonarCloud analysis: https://sonarcloud.io/dashboard?id=SORMAS-Project&pullRequest=${{ github.event.pull_request.number }}` | |
}) | |
- name: Perform CodeQL Analysis | |
uses: github/codeql-action/analyze@v2 | |
- name: Run Trivy vulnerability scanner in repo mode | |
uses: aquasecurity/[email protected] | |
with: | |
scan-type: 'fs' | |
ignore-unfixed: true | |
format: 'sarif' | |
output: 'trivy-results.sarif' | |
scanners: 'vuln,secret,config' | |
- name: Upload Trivy scan results to GitHub Security tab | |
uses: github/codeql-action/upload-sarif@v2 | |
with: | |
sarif_file: 'trivy-results.sarif' | |
# needed as codeQL also performs an upload, and they clash otherwise | |
category: 'code-scanning/trivy-repo' | |
- name: Commit openAPI spec to development | |
# Privileged action needing a secret token. Since this only runs on development in our own repo | |
# the token will be available through a privileged checkout. | |
if: github.event_name == 'push' && github.ref == 'refs/heads/development' | |
&& hashFiles('sormas-rest/target/swagger.yaml') != hashFiles('sormas-rest/swagger.yaml') | |
# https://stackoverflow.com/questions/59604922/authorize-bash-to-access-github-protected-branch | |
run: | | |
git config --global user.name "sormas-vitagroup" | |
git config --global user.email "[email protected]" | |
mkdir /tmp/openapi | |
cp sormas-rest/target/swagger.* /tmp/openapi | |
git fetch | |
git checkout development | |
git pull | |
rm -f sormas-rest/swagger.* | |
cp /tmp/openapi/swagger.* sormas-rest/ | |
git add sormas-rest/swagger.* | |
git commit -m "[GitHub Actions] Update openAPI spec files" | |
git push |