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@SchmollerLab

SchmollerLab at Helmholtz Munich

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  1. Cell_ACDC Cell_ACDC Public

    A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data

    Python 134 22

  2. SpotMAX SpotMAX Public

    Forked from ElpadoCan/SpotMAX

    SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification

    Jupyter Notebook 6 1

  3. activeInstanceSegment activeInstanceSegment Public

    This repo contains the first steps towards my master thesis

    Python 4

  4. python-javabridge-windows python-javabridge-windows Public

    Pre-compiled python-javabridge for Windows. Microsoft Visual C++ NOT required.

    Python 1

  5. java_portable_windows java_portable_windows Public

    Portable Java 8 and JDK 8 for Windows. Used for Cell-ACDC software to run BioFormats in Python

    C 1 1

  6. python-javabridge-acdc python-javabridge-acdc Public

    Forked from LeeKamentsky/python-javabridge

    Python wrapper for the Java Native Interface

    Python 1

Repositories

Showing 10 of 14 repositories
  • Cell_ACDC Public

    A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data

    SchmollerLab/Cell_ACDC’s past year of commit activity
    Python 134 BSD-3-Clause 22 137 0 Updated Nov 28, 2024
  • SpotMAX Public Forked from ElpadoCan/SpotMAX

    SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification

    SchmollerLab/SpotMAX’s past year of commit activity
    Jupyter Notebook 6 GPL-3.0 2 1 0 Updated Nov 25, 2024
  • python-javabridge-windows Public

    Pre-compiled python-javabridge for Windows. Microsoft Visual C++ NOT required.

    SchmollerLab/python-javabridge-windows’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Nov 6, 2024
  • ChatziFISH Public

    Source code used to analyse smFISH data in Chatzitheodoridou et al. 2024

    SchmollerLab/ChatziFISH’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Jul 17, 2024
  • Cell_ACDC_Timon Public Forked from Teranis/Cell_ACDC

    A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data

    SchmollerLab/Cell_ACDC_Timon’s past year of commit activity
    Python 0 BSD-3-Clause 22 0 0 Updated Mar 19, 2024
  • cellpose Public Forked from MouseLand/cellpose

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    SchmollerLab/cellpose’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 405 0 0 Updated Feb 15, 2024
  • activeInstanceSegment Public

    This repo contains the first steps towards my master thesis

    SchmollerLab/activeInstanceSegment’s past year of commit activity
    Python 4 0 0 0 Updated Oct 1, 2023
  • python-javabridge-acdc Public Forked from LeeKamentsky/python-javabridge

    Python wrapper for the Java Native Interface

    SchmollerLab/python-javabridge-acdc’s past year of commit activity
    Python 0 63 0 0 Updated Jul 21, 2023
  • acdc_tools Public

    Collection of tools (widgets, utils, io functions, etc.) used by Cell-ACDC and spotMAX

    SchmollerLab/acdc_tools’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 0 Updated Jun 26, 2023
  • SeelMito Public

    Python code used to analyse the microscopy data in Seel et al. 2023

    SchmollerLab/SeelMito’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated May 2, 2023
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