Merge pull request #224 from SciCatProject/update-deps

Update dependencies

.github/workflows/ci.yml

@@ -26,7 +26,7 @@ jobs:
     needs: formatting
     runs-on: ubuntu-22.04
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
         with:
           python-version: 3.11

.github/workflows/dependency-review.yml

@@ -15,6 +15,6 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: 'Checkout Repository'
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
       - name: 'Dependency Review'
-        uses: actions/dependency-review-action@v2
+        uses: actions/dependency-review-action@v4

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v4.5.0
+  rev: v4.6.0
   hooks:
     - id: check-added-large-files
     - id: check-json
@@ -19,15 +19,15 @@ repos:
       args: ["--drop-empty-cells",
              "--extra-keys 'metadata.language_info.version cell.metadata.jp-MarkdownHeadingCollapsed cell.metadata.pycharm'"]
 - repo: https://github.com/astral-sh/ruff-pre-commit
-  rev: v0.4.2
+  rev: v0.5.7
   hooks:
     - id: ruff-format
       types_or: [ python, pyi ]
     - id: ruff
       args: [--fix, --exit-non-zero-on-fix]
       types_or: [ python, pyi, jupyter ]
 - repo: https://github.com/codespell-project/codespell
-  rev: v2.2.6
+  rev: v2.3.0
   hooks:
     - id: codespell
       additional_dependencies:

pyproject.toml

@@ -66,6 +66,8 @@ filterwarnings = [
     "error",
     # Many tests don't set a checksum, so File raises this warning.
     "ignore:Cannot check if local file:UserWarning",
+    # From paramiko
+    "ignore:TripleDES has been moved:cryptography.utils.CryptographyDeprecationWarning",
 ]
 
 [tool.mypy]
@@ -127,4 +129,7 @@ pydocstyle.convention = "numpy"
 "src/scitacean/testing/strategies.py" = ["D401"]
 
 [tool.codespell]
-ignore-words-list = "specfield"
+ignore-words-list = [
+    "specfield",
+    "socio-economic",
+]

requirements/base.txt

@@ -9,21 +9,21 @@ annotated-types==0.7.0
     # via pydantic
 anyio==4.4.0
     # via httpx
-bcrypt==4.1.3
+bcrypt==4.2.0
     # via paramiko
 certifi==2024.7.4
     # via
     #   httpcore
     #   httpx
-cffi==1.16.0
+cffi==1.17.0
     # via
     #   cryptography
     #   pynacl
-cryptography==42.0.8
+cryptography==43.0.0
     # via paramiko
 dnspython==2.6.1
     # via email-validator
-email-validator==2.1.2
+email-validator==2.2.0
     # via -r base.in
 h11==0.14.0
     # via httpcore
@@ -40,9 +40,9 @@ paramiko==3.4.0
     # via -r base.in
 pycparser==2.22
     # via cffi
-pydantic==2.7.4
+pydantic==2.8.2
     # via -r base.in
-pydantic-core==2.18.4
+pydantic-core==2.20.1
     # via pydantic
 pynacl==1.5.0
     # via paramiko

requirements/ci.txt

@@ -5,15 +5,15 @@
 #
 #    pip-compile-multi
 #
-cachetools==5.3.3
+cachetools==5.4.0
     # via tox
 chardet==5.2.0
     # via tox
 colorama==0.4.6
     # via tox
 distlib==0.3.8
     # via virtualenv
-filelock==3.15.1
+filelock==3.15.4
     # via
     #   tox
     #   virtualenv
@@ -27,9 +27,9 @@ platformdirs==4.2.2
     #   virtualenv
 pluggy==1.5.0
     # via tox
-pyproject-api==1.6.1
+pyproject-api==1.7.1
     # via tox
-tox==4.15.1
+tox==4.17.1
     # via -r ci.in
-virtualenv==20.26.2
+virtualenv==20.26.3
     # via tox

requirements/dev.txt

@@ -32,7 +32,7 @@ json5==0.9.25
     # via jupyterlab-server
 jsonpointer==3.0.0
     # via jsonschema
-jsonschema[format-nongpl]==4.22.0
+jsonschema[format-nongpl]==4.23.0
     # via
     #   jupyter-events
     #   jupyterlab-server
@@ -41,17 +41,17 @@ jupyter-events==0.10.0
     # via jupyter-server
 jupyter-lsp==2.2.5
     # via jupyterlab
-jupyter-server==2.14.1
+jupyter-server==2.14.2
     # via
     #   jupyter-lsp
     #   jupyterlab
     #   jupyterlab-server
     #   notebook-shim
 jupyter-server-terminals==0.5.3
     # via jupyter-server
-jupyterlab==4.2.2
+jupyterlab==4.2.4
     # via -r dev.in
-jupyterlab-server==2.27.2
+jupyterlab-server==2.27.3
     # via jupyterlab
 notebook-shim==0.2.4
     # via jupyterlab
@@ -73,7 +73,7 @@ rfc3986-validator==0.1.1
     # via
     #   jsonschema
     #   jupyter-events
-ruff==0.4.9
+ruff==0.5.7
     # via -r dev.in
 send2trash==1.8.3
     # via jupyter-server
@@ -89,7 +89,7 @@ webcolors==24.6.0
     # via jsonschema
 websocket-client==1.8.0
     # via jupyter-server
-wheel==0.43.0
+wheel==0.44.0
     # via pip-tools
 
 # The following packages are considered to be unsafe in a requirements file:

requirements/docs.txt

@@ -9,13 +9,13 @@
 -r test.txt
 accessible-pygments==0.0.5
     # via pydata-sphinx-theme
-alabaster==0.7.16
+alabaster==1.0.0
     # via sphinx
 asttokens==2.4.1
     # via stack-data
 autodoc-pydantic==2.2.0
     # via -r docs.in
-babel==2.15.0
+babel==2.16.0
     # via
     #   pydata-sphinx-theme
     #   sphinx
@@ -29,7 +29,7 @@ charset-normalizer==3.3.2
     # via requests
 comm==0.2.2
     # via ipykernel
-debugpy==1.8.1
+debugpy==1.8.5
     # via ipykernel
 decorator==5.1.1
     # via ipython
@@ -47,9 +47,9 @@ fastjsonschema==2.20.0
     # via nbformat
 imagesize==1.4.1
     # via sphinx
-ipykernel==6.29.4
+ipykernel==6.29.5
     # via -r docs.in
-ipython==8.25.0
+ipython==8.26.0
     # via
     #   -r docs.in
     #   ipykernel
@@ -61,7 +61,7 @@ jinja2==3.1.4
     #   nbconvert
     #   nbsphinx
     #   sphinx
-jsonschema==4.22.0
+jsonschema==4.23.0
     # via nbformat
 jsonschema-specifications==2023.12.1
     # via jsonschema
@@ -96,7 +96,7 @@ mdurl==0.1.2
     # via markdown-it-py
 mistune==3.0.2
     # via nbconvert
-myst-parser==3.0.1
+myst-parser==4.0.0
     # via -r docs.in
 nbclient==0.10.0
     # via nbconvert
@@ -121,15 +121,15 @@ platformdirs==4.2.2
     # via jupyter-core
 prompt-toolkit==3.0.47
     # via ipython
-psutil==5.9.8
+psutil==6.0.0
     # via ipykernel
 ptyprocess==0.7.0
     # via pexpect
-pure-eval==0.2.2
+pure-eval==0.2.3
     # via stack-data
-pydantic-settings==2.3.3
+pydantic-settings==2.4.0
     # via autodoc-pydantic
-pydata-sphinx-theme==0.15.3
+pydata-sphinx-theme==0.15.4
     # via -r docs.in
 pygments==2.18.0
     # via
@@ -140,7 +140,7 @@ pygments==2.18.0
     #   sphinx
 python-dotenv==1.0.1
     # via pydantic-settings
-pyzmq==26.0.3
+pyzmq==26.1.0
     # via
     #   ipykernel
     #   jupyter-client
@@ -150,15 +150,15 @@ referencing==0.35.1
     #   jsonschema-specifications
 requests==2.32.3
     # via sphinx
-rpds-py==0.18.1
+rpds-py==0.20.0
     # via
     #   jsonschema
     #   referencing
 snowballstemmer==2.2.0
     # via sphinx
 soupsieve==2.5
     # via beautifulsoup4
-sphinx==7.3.7
+sphinx==8.0.2
     # via
     #   -r docs.in
     #   autodoc-pydantic
@@ -168,23 +168,23 @@ sphinx==7.3.7
     #   sphinx-autodoc-typehints
     #   sphinx-copybutton
     #   sphinx-design
-sphinx-autodoc-typehints==2.1.1
+sphinx-autodoc-typehints==2.2.3
     # via -r docs.in
 sphinx-copybutton==0.5.2
     # via -r docs.in
-sphinx-design==0.6.0
+sphinx-design==0.6.1
     # via -r docs.in
-sphinxcontrib-applehelp==1.0.8
+sphinxcontrib-applehelp==2.0.0
     # via sphinx
-sphinxcontrib-devhelp==1.0.6
+sphinxcontrib-devhelp==2.0.0
     # via sphinx
-sphinxcontrib-htmlhelp==2.0.5
+sphinxcontrib-htmlhelp==2.1.0
     # via sphinx
 sphinxcontrib-jsmath==1.0.1
     # via sphinx
-sphinxcontrib-qthelp==1.0.7
+sphinxcontrib-qthelp==2.0.0
     # via sphinx
-sphinxcontrib-serializinghtml==1.1.10
+sphinxcontrib-serializinghtml==2.0.0
     # via sphinx
 stack-data==0.6.3
     # via ipython

requirements/mypy.txt

@@ -6,19 +6,19 @@
 #    pip-compile-multi
 #
 -r test.txt
-mypy==1.10.0
+mypy==1.11.1
     # via -r mypy.in
 mypy-extensions==1.0.0
     # via mypy
-types-docutils==0.21.0.20240423
+types-docutils==0.21.0.20240724
     # via -r mypy.in
 types-paramiko==3.4.0.20240423
     # via -r mypy.in
 types-python-dateutil==2.9.0.20240316
     # via -r mypy.in
-types-pyyaml==6.0.12.20240311
+types-pyyaml==6.0.12.20240808
     # via -r mypy.in
-types-requests==2.32.0.20240602
+types-requests==2.32.0.20240712
     # via -r mypy.in
 urllib3==2.2.2
     # via types-requests

requirements/static.txt

@@ -9,17 +9,17 @@ cfgv==3.4.0
     # via pre-commit
 distlib==0.3.8
     # via virtualenv
-filelock==3.15.1
+filelock==3.15.4
     # via virtualenv
-identify==2.5.36
+identify==2.6.0
     # via pre-commit
 nodeenv==1.9.1
     # via pre-commit
 platformdirs==4.2.2
     # via virtualenv
-pre-commit==3.7.1
+pre-commit==3.8.0
     # via -r static.in
-pyyaml==6.0.1
+pyyaml==6.0.2
     # via pre-commit
-virtualenv==20.26.2
+virtualenv==20.26.3
     # via pre-commit

requirements/test.txt

@@ -6,23 +6,23 @@
 #    pip-compile-multi
 #
 -r base.txt
-attrs==23.2.0
+attrs==24.2.0
     # via hypothesis
 execnet==2.1.1
     # via pytest-xdist
-filelock[typing]==3.15.1
+filelock[typing]==3.15.4
     # via -r test.in
-hypothesis==6.103.2
+hypothesis==6.110.1
     # via -r test.in
 iniconfig==2.0.0
     # via pytest
 packaging==24.1
     # via pytest
 pluggy==1.5.0
     # via pytest
-pyfakefs==5.5.0
+pyfakefs==5.6.0
     # via -r test.in
-pytest==8.2.2
+pytest==8.3.2
     # via
     #   -r test.in
     #   pytest-randomly
@@ -34,7 +34,7 @@ pytest-socket==0.7.0
     # via -r test.in
 pytest-xdist==3.6.1
     # via -r test.in
-pyyaml==6.0.1
+pyyaml==6.0.2
     # via -r test.in
 sortedcontainers==2.4.0
     # via hypothesis