v0.5.9

StructuralIdentifiability v0.5.9

Diff since v0.5.8

Merged pull requests:

• Adding known_ic (known generic initial conditions) to the MTK interface (#331) (@pogudingleb)
• Adding MTK interface for the discrete-time identifiability (#332) (@pogudingleb)
• Bump crate-ci/typos from 1.22.0 to 1.22.3 (#333) (@dependabot[bot])
• Bump crate-ci/typos from 1.22.3 to 1.22.7 (#334) (@dependabot[bot])
• Bump crate-ci/typos from 1.22.7 to 1.22.9 (#335) (@dependabot[bot])
• Bump crate-ci/typos from 1.22.9 to 1.23.1 (#336) (@dependabot[bot])
• Bump crate-ci/typos from 1.23.1 to 1.23.2 (#337) (@dependabot[bot])
• CompatHelper: bump compat for AbstractAlgebra to 0.42, (keep existing compat) (#338) (@github-actions[bot])
• CompatHelper: bump compat for Nemo to 0.46, (keep existing compat) (#339) (@github-actions[bot])
• Bump crate-ci/typos from 1.23.2 to 1.23.3 (#340) (@dependabot[bot])
• Bump crate-ci/typos from 1.23.3 to 1.23.5 (#342) (@dependabot[bot])
• Bump crate-ci/typos from 1.23.5 to 1.23.6 (#343) (@dependabot[bot])
• Updating MTK interface (#346) (@pogudingleb)
• Fixing downgrade tests (#347) (@pogudingleb)

Closed issues:

• Cannot (?) use known_ic in combination with MTK variables (#324)
• SI not compatible with latest Symbolics, SymbolicUtils, and ModelingToolkit versions (#326)

v0.5.8

StructuralIdentifiability v0.5.8

Diff since v0.5.7

Merged pull requests:

• Bump crate-ci/typos from 1.20.8 to 1.20.9 (#313) (@dependabot[bot])
• CompatHelper: bump compat for AbstractAlgebra to 0.41, (keep existing compat) (#314) (@github-actions[bot])
• Bump crate-ci/typos from 1.20.9 to 1.20.10 (#315) (@dependabot[bot])
• CompatHelper: bump compat for Nemo to 0.44, (keep existing compat) (#316) (@github-actions[bot])
• CompatHelper: bump compat for Nemo to 0.45, (keep existing compat) (#319) (@github-actions[bot])
• Bump crate-ci/typos from 1.20.10 to 1.21.0 (#320) (@dependabot[bot])
• Restrict Julia version to <= 1.10.2 (#322) (@sumiya11)
• CompatHelper: bump compat for SymbolicUtils in [weakdeps] to 2, (keep existing compat) (#323) (@github-actions[bot])
• Bump crate-ci/typos from 1.21.0 to 1.22.0 (#325) (@dependabot[bot])
• Bump the symbolic libraries and fix deprecations (#327) (@ChrisRackauckas)
• Sequel to #327 (#328) (@pogudingleb)
• Lower bound for the Julia version (compat ne vinovat) (#329) (@pogudingleb)
• bounding julia version from above (#330) (@pogudingleb)

Closed issues:

• Cannot precompile on v1.10.3 (#321)

v0.5.7

StructuralIdentifiability v0.5.7

Diff since v0.5.6

Merged pull requests:

• Bump crate-ci/typos from 1.20.4 to 1.20.8 (#311) (@dependabot[bot])
• Add access to eval_at_nemo via MTK extension (#312) (@sumiya11)

v0.5.6

StructuralIdentifiability v0.5.6

Diff since v0.5.5

Merged pull requests:

• Bump julia-actions/setup-julia from 1 to 2 (#305) (@dependabot[bot])
• Bump crate-ci/typos from 1.19.0 to 1.20.0 (#306) (@dependabot[bot])
• Bump crate-ci/typos from 1.20.0 to 1.20.4 (#307) (@dependabot[bot])
• Expression of a function in terms of generators of rational function field (bug fix) (#308) (@pogudingleb)
• Now fixing Aqua (#309) (@pogudingleb)

v0.5.5

StructuralIdentifiability v0.5.5

Diff since v0.5.4

Merged pull requests:

• Bump actions/checkout from 3 to 4 (#282) (@dependabot[bot])
• Bump codecov/codecov-action from 3 to 4 (#283) (@dependabot[bot])
• Bump crate-ci/typos from 1.16.23 to 1.18.1 (#284) (@dependabot[bot])
• ci: explicitly specify token for codecov (#285) (@thazhemadam)
• Update Groebner.jl and PirlimPinPin.jl (#287) (@sumiya11)
• Bump crate-ci/typos from 1.18.1 to 1.18.2 (#288) (@dependabot[bot])
• updating compats for AA & Nemo (#290) (@pogudingleb)
• CompatHelper: bump compat for Nemo to 0.42, (keep existing compat) (#291) (@github-actions[bot])
• CompatHelper: bump compat for AbstractAlgebra to 0.39, (keep existing compat) (#292) (@github-actions[bot])
• [skip ci] update downgrade CI repo (#293) (@ArnoStrouwen)
• CompatHelper: bump compat for AbstractAlgebra to 0.40, (keep existing compat) (#294) (@github-actions[bot])
• CompatHelper: bump compat for Nemo to 0.43, (keep existing compat) (#295) (@github-actions[bot])
• Update ModelingToolkit.jl (#296) (@sumiya11)
• CompatHelper: bump compat for ParamPunPam to 0.4, (keep existing compat) (#297) (@github-actions[bot])
• updating to the newest AA and Nemo (#299) (@pogudingleb)
• Getting Nemo&AA update (#300) (@pogudingleb)
• Update to MTK9 (#301) (@pogudingleb)
• Bump crate-ci/typos from 1.18.2 to 1.19.0 (#302) (@dependabot[bot])
• Fix issues with unicode names (#303) (@sumiya11)

Closed issues:

• Write how to define models with MTK (#155)
• Algebraic function in the ODE for structural analysis? (#174)
• Structural Analysis for algebraic difference equations (DiscreteSystem) (#175)
• Including initial conditions in equations (#236)
• Option for having a known initial condition (#237)
• Using ModelingToolkit to mark ODE inputs and outputs for StructuralIdentifiability (#268)

v0.5.4

StructuralIdentifiability v0.5.4

Diff since v0.5.3

Merged pull requests:

• WIP: Identifiability with known generic initial conditions (#249) (@pogudingleb)

Closed issues:

• mtk_to_si no longer defined/exported with new functionality. (#279)

v0.5.3

StructuralIdentifiability v0.5.3

Diff since v0.5.2

Merged pull requests:

• Aqua + Spellcheck (#274) (@pogudingleb)
• Fix ModelingTookit extension (#280) (@TorkelE)

Closed issues:

• Fixing type piracy (#254)
• Alternative names for certain kwargs? (#256)

v0.5.2

StructuralIdentifiability v0.5.2

Diff since v0.5.1

Merged pull requests:

• Add Downgrade.yml (#255) (@sumiya11)
• CompatHelper: bump compat for AbstractAlgebra to 0.35, (keep existing compat) (#257) (@github-actions[bot])
• CompatHelper: bump compat for Nemo to 0.39, (keep existing compat) (#258) (@github-actions[bot])
• CompatHelper: bump compat for Groebner to 0.6, (keep existing compat) (#259) (@github-actions[bot])
• update from master (#260) (@pogudingleb)
• Bump actions/checkout from 3 to 4 (#261) (@dependabot[bot])
• renaming p to prob_threschold (#262) (@pogudingleb)
• CompatHelper: bump compat for ParamPunPam to 0.3, (keep existing compat) (#265) (@github-actions[bot])
• Render ModelingToolkit as an extension (#266) (@pogudingleb)
• Bump actions/cache from 3 to 4 (#267) (@dependabot[bot])
• removing Requires from the deps (#273) (@pogudingleb)

Closed issues:

• Structural Identifiability for Interpolation (#219)
• Displaying (t) in the output for the case when the input is in the internal SI format. (#243)

v0.5.1

StructuralIdentifiability v0.5.1

Diff since v0.5.0

v0.5.0

StructuralIdentifiability v0.5.0

Diff since v0.4.16

The main new functionality:

• Assessing identifiability of states (i.e. observability), not only of parameters
• Computing the generators of identifiable/observable functions
• Suggesting reparametrizations with better identifiability properties

Merged pull requests:

• CompatHelper: bump compat for AbstractAlgebra to 0.34, (keep existing compat) (#250) (@github-actions[bot])
• CompatHelper: bump compat for Nemo to 0.38, (keep existing compat) (#251) (@github-actions[bot])
• Tutorial on reparametrization (#252) (@pogudingleb)