Skip to content
View ShreyParikh07's full-sized avatar

Highlights

  • Pro

Block or report ShreyParikh07

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
ShreyParikh07/README.md

Ahoy, I am Shrey Parikh 👋

A biology student with a passion for programming

my banner

📜 About

I am a PhD student under the guidance of Prof. Dr. Fabian Theis at the Institute of Computational Biology, Helmholtz Zentrum München😃

I have completeted my first masters in biochemistry and a second masters in molecular and cellular biology. My thesis for the second masters titled 'Mapping the transcriptomic landscape of PBMCs across health and disease' was completed under the guidance of Dr. Johanna Klughammer at the Gene Centre, LMU🧑‍💻

My project was divided into two parts and the first part revolved around creating a reference atlas for healthy peripheral blood mononuclear cells (PBMCs) scRNA-Seq data by trainining conditional neural networks through scVI from the scArches tool with datasets obtained from publications. The atlas allowed the cell type repertoire and expression landscape mapping of paediatric patients with interferonopathies and lupus which aided in better understanding of the healthy and diseased states. The second part of my project involved building a sex classifier for scRNA-Seq data to classify cells into males and females. The classifier can be found on ScraMF

Other than biology, I am very passionate about cooking and music. My suprisingly high consumption of cooking videos on youtube helps me harness my skills in the kitchen better. I also love playing basketball, nature and everything outdoors! At the risk of sounding geeky, I will say that I love watching wildlife documentaries and can recommend some very good ones too😄

Thank you for reading and hope you have an absolutely mindblasting day!

My Technical Skills Include:

PythonMatplotlibNumPyPandasXGBoostScanpyscArches

Jupyter NotebookVisual Studio CodeGitHub

MarkdownNotionMicrosoftMicrosoft ExcelMicrosoft Word

My GitHub Stats 📈

Shrey's GitHub stats

🤝 Connect With Me

Shrey Parikh | Twitter Shrey Parikh | Instagram Shrey Parikh | Email

Popular repositories Loading

  1. ShreyParikh07 ShreyParikh07 Public