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@SingleR-inc

SingleR-inc

Code and resources for the SingleR method

Cell type annotation for single-cell data

This organization manages the code for the SingleR Bioconductor package and associated resources. (No, we're not really a corporation, it's just that the @SingleR handle was already taken.)

To get started, check out one or more of the links below:

Python users may also be interested in the Python implementation.

The cool logo was derived from the sticker for the package.

Popular repositories Loading

  1. SingleR SingleR Public

    Clone of the Bioconductor repository for the SingleR package.

    R 179 19

  2. celldex celldex Public

    Collection of cell type reference datasets.

    R 48 7

  3. SingleRBook-base SingleRBook-base Public archive

    See https://github.com/LTLA/SingleRBook for the latest version of this content.

    TeX 12 9

  4. singler-py singler-py Public

    Python bindings for SingleR

    Python 6

  5. SingleRBook SingleRBook Public

    The package wrapping the book, for deployment via the Bioconductor build system.

    TeX 5 1

  6. singlepp singlepp Public

    Pure C++ implementation of the SingleR method for cell type annotation

    C++ 1

Repositories

Showing 10 of 11 repositories
  • singler-py Public

    Python bindings for SingleR

    SingleR-inc/singler-py’s past year of commit activity
    Python 6 MIT 0 0 0 Updated Dec 28, 2024
  • singlepp Public

    Pure C++ implementation of the SingleR method for cell type annotation

    SingleR-inc/singlepp’s past year of commit activity
    C++ 1 MIT 0 0 0 Updated Dec 26, 2024
  • SingleR Public

    Clone of the Bioconductor repository for the SingleR package.

    SingleR-inc/SingleR’s past year of commit activity
    R 179 GPL-3.0 19 10 0 Updated Dec 20, 2024
  • language-comparison Public

    Check consistency between R and Python bindings

    SingleR-inc/language-comparison’s past year of commit activity
    R 0 MIT 0 0 0 Updated Dec 15, 2024
  • celldex-py Public

    Collection of reference cell type datasets

    SingleR-inc/celldex-py’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Dec 11, 2024
  • .github Public

    Organization overview.

    SingleR-inc/.github’s past year of commit activity
    0 MIT 0 0 0 Updated Dec 11, 2024
  • SingleRBook Public

    The package wrapping the book, for deployment via the Bioconductor build system.

    SingleR-inc/SingleRBook’s past year of commit activity
    TeX 5 1 0 0 Updated Nov 18, 2024
  • singlepp_loaders Public

    Load reference datasets for SingleR

    SingleR-inc/singlepp_loaders’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Oct 9, 2024
  • celldex Public

    Collection of cell type reference datasets.

    SingleR-inc/celldex’s past year of commit activity
    R 48 7 14 0 Updated May 31, 2024
  • SingleRBook-base Public archive

    See https://github.com/LTLA/SingleRBook for the latest version of this content.

    SingleR-inc/SingleRBook-base’s past year of commit activity
    TeX 12 9 1 0 Updated Jun 21, 2022

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