Patogen identification NER

Description

Named entity recognition using Spacy Ner, BERT. We follow the next steps:

1. EDA
2. Data preprocessing
3. Spacy NER, BERT_NER Modeling

Dataset

1. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3951655/

NCBI disease corpus, a collection of 793 PubMed abstracts fully annotated at the mention and concept level to serve as a research resource for the biomedical natural language processing community.