Fix Build Errors & Ensure Update Dependencies #442
Workflow file for this run
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| # | |
| # This source file is part of the PAWS application based on the Stanford Spezi Template Application project | |
| # | |
| # SPDX-FileCopyrightText: 2023 Stanford University | |
| # | |
| # SPDX-License-Identifier: MIT | |
| # | |
| name: Build and Test | |
| on: | |
| pull_request: | |
| workflow_dispatch: | |
| workflow_call: | |
| concurrency: | |
| group: Build-and-Test-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| buildandtest: | |
| name: Build and Test | |
| uses: StanfordBDHG/.github/.github/workflows/xcodebuild-or-fastlane.yml@v2 | |
| permissions: | |
| contents: read | |
| with: | |
| artifactname: PAWS.xcresult | |
| runsonlabels: '["macOS", "self-hosted"]' | |
| setupfirebaseemulator: true | |
| fastlanelane: test | |
| firebaseemulatorimport: ./firebase | |
| secrets: | |
| GOOGLE_APPLICATION_CREDENTIALS_BASE64: ${{ secrets.GOOGLE_APPLICATION_CREDENTIALS_BASE64 }} | |
| uploadcoveragereport: | |
| name: Upload Coverage Report | |
| needs: buildandtest | |
| uses: StanfordBDHG/.github/.github/workflows/create-and-upload-coverage-report.yml@v2 | |
| permissions: | |
| contents: read | |
| with: | |
| coveragereports: PAWS.xcresult | |
| secrets: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| buildandtestdatapipelinenotebook: | |
| name: Build and Test ECG Reviewer Notebook | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| - name: Setup NodeJS | |
| uses: actions/setup-node@v3 | |
| with: | |
| node-version: '22' | |
| - name: Setup Java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'microsoft' | |
| java-version: '17' | |
| - name: Setup LaTex | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get install -y --no-install-recommends pandoc texlive-xetex texlive-fonts-recommended texlive-plain-generic || true | |
| if ! dpkg -l pandoc texlive-xetex texlive-fonts-recommended texlive-plain-generic; then | |
| sudo apt-get update --fix-missing | |
| sudo apt-get install -y pandoc texlive-xetex texlive-fonts-recommended texlive-plain-generic | |
| fi | |
| - name: Cache Firebase Emulators | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/firebase/emulators | |
| key: ${{ runner.os }}-${{ runner.arch }}-firebase-emulators-${{ hashFiles('~/.cache/firebase/emulators/**') }} | |
| - name: Install Firebase CLI Tools | |
| run: npm install -g firebase-tools | |
| - name: Install Infrastructure | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install jupyterlab | |
| - name: Install ECGReviewer Dependencies | |
| run: | | |
| pip install -r ./ecg_data_manager/requirements.txt | |
| - name: Install Cloud Functions Dependencies | |
| run: | | |
| npm install --prefix functions | |
| - name: Set Firestore Emulator Environment Variable | |
| run: | | |
| echo "FIRESTORE_EMULATOR_HOST=localhost:8080" >> $GITHUB_ENV | |
| echo "GCLOUD_PROJECT=ecg_example_project" >> $GITHUB_ENV | |
| - name: Run Firebase Emulator & Execute Notebook | |
| run: | | |
| firebase emulators:exec --import=./ecg_data_manager/sample_data "jupyter nbconvert --to pdf --execute './ecg_data_manager/ECG Reviewer.ipynb'" | |
| env: | |
| CI: true | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: ECGReviewer_ColabBasic.pdf | |
| path: ECGReviewer_ColabBasic.pdf |