CloseCall is a bioinformatics pipeline for identifying RNA-RNA interactions in NGS datasets generated using a new high-throughput protocol named Proximity RNA-seq to fix and sequence RNA complexes. The CloseCall pipeline has 3 main components:
- Mapping and QC
- Monte Carlo Simulation to identify statistically significant RNA-RNA interactions
The software is written in Perl and Java.
The CloseCall documentation can be found with the code in the docs subfolder and can also read online.
- Proximity RNA-seq Publication:
CloseCall was written by Steven Wingett, part of the Babraham Bioinformatics group.
GNU General Public License v3.0