GitHub - StevenWingett/HiCUP: Hi-C data processing pipeline

HiCUP (Hi-C User Pipeline)

HiCUP is a bioinformatics pipeline for processing Hi-C data.

What to contribute to the HiCUP codebase? If so, please push updates via GitHub to the "development" branch.

Name		Name	Last commit message	Last commit date
Latest commit History 159 Commits
.github/workflows		.github/workflows
Conversion		Conversion
Misc		Misc
Testing		Testing
config_files		config_files
docs		docs
r_scripts		r_scripts
scribler		scribler
.gitignore		.gitignore
LICENSE.txt		LICENSE.txt
README.md		README.md
RELEASE_NOTES.txt		RELEASE_NOTES.txt
hicup		hicup
hicup_deduplicator		hicup_deduplicator
hicup_digester		hicup_digester
hicup_filter		hicup_filter
hicup_mapper		hicup_mapper
hicup_module.pm		hicup_module.pm
hicup_reporter		hicup_reporter
hicup_truncater		hicup_truncater