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Su Lab

Code repos for the Su Lab at The Scripps Research Institute

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  1. WikidataIntegrator WikidataIntegrator Public

    A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint

    Python 247 47

  2. DrugMechDB DrugMechDB Public

    A database of paths that represent the mechanism of action from a drug to a disease in an indication.

    Jupyter Notebook 57 18

  3. Applied-Bioinformatics Applied-Bioinformatics Public

    Student course material for the Applied Bioinformatics course at Scripps Research

    Jupyter Notebook 35 32

  4. YPet YPet Public

    Javascript library to rapidly annotate paragraphs of text on websites with the goal of making the annotation process as fast and simple as possible.

    JavaScript 31 3

  5. mark2cure mark2cure Public

    Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.

    Python 14 8

  6. sparql_to_pandas sparql_to_pandas Public

    Example for accessing SPARQL endpoints in Python with Pandas

    Jupyter Notebook 13 9

Repositories

Showing 10 of 100 repositories
  • sulab.org Public
    SuLab/sulab.org’s past year of commit activity
    HTML 0 BSD-3-Clause 6 0 0 Updated Dec 16, 2024
  • SuLab/KnowledgeGraphEmbedding’s past year of commit activity
    Jupyter Notebook 1 MIT 267 0 0 Updated Aug 9, 2024
  • CBRonMRN Public
    SuLab/CBRonMRN’s past year of commit activity
    Python 0 0 0 0 Updated Feb 21, 2024
  • WikidataIntegrator Public

    A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint

    SuLab/WikidataIntegrator’s past year of commit activity
    Python 247 MIT 47 10 0 Updated Nov 14, 2023
  • DrugMechDB Public

    A database of paths that represent the mechanism of action from a drug to a disease in an indication.

    SuLab/DrugMechDB’s past year of commit activity
    Jupyter Notebook 57 CC0-1.0 18 7 (1 issue needs help) 2 Updated Sep 24, 2023
  • TSRI-CBB Public

    This is the Github repository for The Scripps Research Institute Computational Biology and Bioinformatics (CBB) community and affiliated core track for graduate students.

    SuLab/TSRI-CBB’s past year of commit activity
    HTML 4 0 1 (1 issue needs help) 0 Updated Jun 27, 2023
  • DMDB_Analysis Public
    SuLab/DMDB_Analysis’s past year of commit activity
    Jupyter Notebook 0 3 0 2 Updated Apr 20, 2023
  • DrugMechDB-1 Public Forked from SuLab/DrugMechDB

    A database of paths that represent the mechanism of action from a drug to a disease in an indication.

    SuLab/DrugMechDB-1’s past year of commit activity
    Jupyter Notebook 0 MIT 18 0 0 Updated Apr 13, 2023
  • path_plots Public Forked from mmayers12/path_plots

    A simple repo to quickly plot paths in a newtorkx graph

    SuLab/path_plots’s past year of commit activity
    Python 0 3 0 0 Updated Mar 23, 2023
  • scheduled-bots Public

    GeneWiki Scheduled Bots

    SuLab/scheduled-bots’s past year of commit activity
    Jupyter Notebook 9 MIT 15 15 2 Updated Feb 17, 2023

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