loading error for "E-GEOD-49355"

[JTFouquier]

#!python

[INFO, L:74] -process experiment E-GEOD-49355-
[INFO, L:155] get experiment info from http://www.ebi.ac.uk/arrayexpress/json/v2/experiments/arrays.txt
[INFO, L:169] get experiment file info from http://www.ebi.ac.uk/arrayexpress/json/v2/files/arrays.txt
[INFO, L:177] get experiment sdrf file from http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22069/E-GEOD-22069.hyb.sdrf.txt
[INFO, L:177] get experiment sdrf file from http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22069/E-GEOD-22069.seq.sdrf.txt
[INFO, L:219] get experiment file info from http://www.ebi.ac.uk/arrayexpress/json/v2/files/E-GEOD-49355
[INFO, L:232] get sample file: http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49355/E-GEOD-49355.processed.1.zip
Traceback (most recent call last):
  File "manage.py", line 10, in <module>
    execute_from_command_line(sys.argv)
  File "/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/__init__.py", line 399, in execute_from_command_line
    utility.execute()
  File "/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/__init__.py", line 392, in execute
    self.fetch_command(subcommand).run_from_argv(self.argv)
  File "/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/base.py", line 242, in run_from_argv
    self.execute(*args, **options.__dict__)
  File "/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/base.py", line 285, in execute
    output = self.handle(*args, **options)
  File "/home/cwu/prj/biogps/biogps_dataset/dataset/management/commands/start.py", line 84, in handle
    data_matrix = setup_dataset(e)
  File "/home/cwu/prj/biogps/biogps_dataset/dataset/management/commands/start.py", line 271, in setup_dataset
    raise Exception, 'file format wrong, check columns of file:%s'%(path+'/'+f)
Exception: file format wrong, check columns of file:tmp/unzip_sample/E-GEOD-49355/GSM1197996_sample_table.txt

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• Bitbucket: https://bitbucket.org/sulab/biogps_dataset/issue/1
• Originally reported by: Chunlei Wu
• Originally created at: 2014-03-18T02:20:05.386

[JTFouquier]

new format, compatible now

ID_REF VALUE ABS_CALL
affx-biob-5_at 160.847 P
affx-dapx-5_at 1.539206 A
200031_s_at 6626.281 P

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Original comment by: jin_xuefeng