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Reduced size of data used in vignettes.
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PratibhaPanwar committed Sep 8, 2024
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16 changes: 6 additions & 10 deletions R/data.R
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#' Mouse Embryo Data
#'
#' This dataset contains spatial transcriptomics data from 3 mouse embryos, with
#' 351 genes and a total of 57536 cells. For vignettes, we subset the data by selecting
#' only embryo 2 and removing all cells that were annotated as 'low quality'. After
#' subsetting, we have 14,185 cells from embryo 2 and 351 genes.
#'
#' 351 genes and a total of 57536 cells. For vignettes, we subset the data by randomly
#' selecting 5000 cells from embryo 2, excluding cells that were annotated as 'low quality'.
#'
#' @name mEmbryo2
#' @aliases me_data me_expr
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#' any cells annotated as 'low quality'. After subsetting, we have 1000 cells from
#' embryo 2 and 351 genes.
#'
#'
#' @name example
#' @aliases spe nnCells regXclust
#' @docType data
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#'
#' This dataset contains spatial transcriptomics data from 181 mouse hypothalamus
#' samples embryos, 155 genes and a total of 1,027,080 cells. For running the
#' vignettes, we subset the data by selecting only 3 samples - Animal 1 Bregma -0.09
#' and Animal 7 Bregmas 0.16 and -0.09, removed all cells that were annotated
#' as 'ambiguous', and removed 20 genes that were assessed using a different technology.
#' After subsetting, we have 15,848 cells from 3 mouse brain samples and 135 genes.
#'
#' vignettes, we subset the data by selecting total 6000 cells from only 3 samples
#' - Animal 1 Bregma -0.09 (2080 cells) and Animal 7 Bregmas 0.16 (1936 cells) and
#' -0.09 (1984 cells), excluding cells that were annotated as 'ambiguous', and
#' removed 20 genes that were assessed using a different technology.
#'
#' @name mHypothal
#' @aliases mh_data mh_expr
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5 changes: 2 additions & 3 deletions man/mEmbryo2.Rd

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8 changes: 4 additions & 4 deletions man/mHypothal.Rd

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