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Based on KEGG Organism Code

Simonas Marcišauskas edited this page Sep 23, 2019 · 1 revision

Based on KEGG Organism Three-Four Letter Code

If the target organism is listed in KEGG Species List, one can quickly reconstruct the model based on existing KEGG Orthology associations for such species. Protein multi-FASTA file is not needed in such reconstruction. For instance, the model for Saccharomyces cerevisiae can be obtained by running the following command:

model=getKEGGModelForOrganism('sce');