chore: round of model I/O #239
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| name: YAML validation | |
| on: | |
| push: | |
| branches: [develop] | |
| pull_request: | |
| branches: [main, develop] | |
| jobs: | |
| yaml-validation: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: YAML Lint | |
| uses: ibiqlik/action-yamllint@v1 | |
| with: | |
| ## File(s) or Directory, separate by space if multiple files or folder are specified | |
| file_or_dir: model/ | |
| ## Custom configuration (as YAML source) | |
| config_data: "{extends: default, rules: {line-length: disable}}" | |
| ## Format for parsing output [parsable,standard,colored,auto] | |
| # format: # optional, default is colored | |
| ## Return non-zero exit code on warnings as well as errors | |
| # strict: # optional, default is false | |
| - name: Import with cobrapy | |
| uses: addnab/docker-run-action@v3 | |
| with: | |
| image: ghcr.io/metabolicatlas/memote-docker:0.13 | |
| options: -v ${{ github.workspace }}:/opt | |
| shell: bash | |
| run: | | |
| cd /opt | |
| python -c "import cobra ; cobra.io.load_yaml_model('model/yeast-GEM.yml')" |