Add mets concentration from ymdb #163
Workflow file for this run
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| name: memote run | |
| on: pull_request | |
| jobs: | |
| memote-run: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/metabolicatlas/memote-docker:0.13 | |
| volumes: | |
| - ${{ github.workspace }}:/project:rw | |
| options: --user root --workdir /project | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Create .env | |
| run: | | |
| touch .env | |
| cd /project | |
| pip install -r code/requirements/ci-requirements.txt | |
| python -c 'import code.io as io; model = io.read_yeast_model(make_bigg_compliant=True); io.write_yeast_model(model)' | |
| memote run --ignore-git --solver-timeout 30 |