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Update test_14.sh
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Updated test for GATK dict file
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johausmann authored Oct 10, 2023
1 parent d41a5f0 commit 07b3c52
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2 changes: 1 addition & 1 deletion tests/scripts/test_14.sh
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Expand Up @@ -15,7 +15,7 @@ nextflow main.nf -profile conda --name test_data \

# Test reference genome related output
test -s $output/reference/sequences.fa.fai || { echo "Missing fasta index file!"; exit 1; }
test -s $output/reference/sequences.fa.dict || { echo "Missing GATK dict file!"; exit 1; }
test -s $output/reference/sequences.dict || { echo "Missing GATK dict file!"; exit 1; }

# Test bwa index files are present
test -s $output/reference/sequences.fa.0123 || { echo "Missing bwa 0123 index file!"; exit 1; }
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