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fix: fix order and duration of sequences of standard protocol
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celprov committed Aug 22, 2024
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28 changes: 14 additions & 14 deletions docs/data-collection/intro.md
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Expand Up @@ -148,20 +148,20 @@ Most of what is described in the present SOPs addresses the *Reliability Imaging
[HCPh_LR](../assets/files/HCPh_LR.pdf), and
[HCPh_RL](../assets/files/HCPh_RL.pdf).

| **Reliability Imaging Protocol (36 sessions $\times$ one scanner)** | mm:ss | **Standard Imaging Protocol (12 sessions $\times$ three scanners)** | mm:ss |
|---|---|---|---|
| Head scout | 00:14 | Head scout | 00:14 |
| FoV Manual positioning | 01:00 | FoV Manual positioning | 01:00 |
| T1w (anatomical reference) | 05:41 | T1w (anatomical reference) | 05:44 |
| DWI ($B_\text{0}$ field mapping) | 00:54 | EPI BOLD ($B_\text{0}$ field mapping) | 00:29 |
| DWI (dMRI, structural connectivity) | 33:52 | BOLD (multi-echo RSfMRI, eyes open) | 20:29 |
| GRE ($B_\text{0}$ field mapping) | 02:38 | GRE ($B_\text{0}$ field mapping) | 02:31 |
| BOLD (positive-control task fMRI) | 03:07 | DWI (dMRI, structural connectivity) | 33:17 |
| EPI BOLD ($B_\text{0}$ field mapping) | 00:27 | DWI ($B_\text{0}$ field mapping) | 00:55 |
| BOLD (multi-echo RSfMRI, naturalistic movie) | 20:09 | T2w (anatomical reference) | 05:44 |
| BOLD (breath-holding task fMRI) | 06:00 | | |
| T2w (anatomical reference) | 05:10 | | |
| **Total Acquisition Time** | 79:12 | **Total Acquisition Time** | 71:11 |
| **Reliability Imaging Protocol (36 sessions $\times$ one scanner)** | mm:ss | **Standard Imaging Protocol (12 sessions $\times$ three scanners)** | mm:ss ({{settings.mri.models.mri1}}) | mm:ss ({{settings.mri.models.mri2}}) | mm:ss ({{settings.mri.models.mri3}}) |
|---|---|---|---|---|---|
| Head scout | 00:14 | Head scout | 00:14 | " | " |
| FoV Manual positioning | 01:00 | FoV Manual positioning | 01:00 | " | " |
| T1w (anatomical reference) | 05:41 | T1w (anatomical reference) | 05:03 | 04:23 | 04:23 |
| DWI ($B_\text{0}$ field mapping) | 00:54 | EPI BOLD ($B_\text{0}$ field mapping) | 00:29 | " | " |
| DWI (dMRI, structural connectivity) | 33:52 | BOLD (multi-echo RSfMRI, eyes open) | 20:29 | " | " |
| GRE ($B_\text{0}$ field mapping) | 02:38 | GRE ($B_\text{0}$ field mapping) | 02:31 | " | " |
| BOLD (positive-control task fMRI) | 03:07 | DWI (dMRI, structural connectivity) | 33:17 | 33:23 | 33:25 |
| EPI BOLD ($B_\text{0}$ field mapping) | 00:27 | DWI ($B_\text{0}$ field mapping) | 00:55 | " | " |
| BOLD (multi-echo RSfMRI, naturalistic movie) | 20:09 | T2w (anatomical reference) | 05:44 | 05:41 | 05:44|
| BOLD (breath-holding task fMRI) | 06:00 | | | | |
| T2w (anatomical reference) | 05:10 | | | | |
| **Total Acquisition Time** | 79:12 | **Total Acquisition Time** | 72:54 | 72:12 | 72:22 |

!!! important "Stimulation program timings (reliability imaging protocol only)"

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