to version 7.2

Version 7.2

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: msigdf
 Type: Package
 Title: MSigDB in a data frame
-Version: 7.1
+Version: 7.2
 Authors@R: c(
     person("Stephen", "Turner", email = "[email protected]", role = "aut"),
     person("Toledo", "Enrique", email = "[email protected]", role = c("ctb","cre")))
@@ -10,7 +10,7 @@ URL: https://github.com/ToledoEM/msigdf
 License: CC0
 Encoding: UTF-8
 LazyData: true
-RoxygenNote: 7.1.0
+RoxygenNote: 7.1.1
 Depends: R (>= 3.1.2)
 Imports: tibble
 Suggests: knitr, plyr, tidyverse, rmarkdown, BiocStyle

README.md

@@ -6,7 +6,7 @@ The [Molecular Signatures Database (MSigDB)](http://www.broad.mit.edu/gsea/msigd
 This is the updated version of the archived repo of [@stephenturner](https://github.com/stephenturner/msigdf/pull/1)   
 
 
-Current version: [v7.1](https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.1_Release_Notes) (March 2020).
+Current version: [v7.2](https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_Latest_Release_Notes) (September 2020).
 
 ## Installation
 

data-raw/get_gmt.sh

@@ -4,23 +4,29 @@ if [ ! -d "gmt" ]; then
 	mkdir gmt
 fi
 
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/h.all.v7.1.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c7.all.v7.1.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c6.all.v7.1.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.mf.v7.1.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.cc.v7.1.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.bp.v7.1.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.cm.v7.1.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.cgn.v7.1.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.v7.1.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.reactome.v7.1.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.pid.v7.1.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.kegg.v7.1.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.biocarta.v7.1.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cgp.v7.1.symbols.gmt
-wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c1.all.v7.1.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c1.all.v7.2.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.v7.2.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.reactome.v7.2.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.pid.v7.2.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.kegg.v7.2.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.biocarta.v7.2.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cgp.v7.2.symbols.gmt
+wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.wikipathways.v7.2.symbols.gmt
 
-wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.v7.1.symbols.gmt
-wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.mirdb.v7.1.symbols.gmt
-wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.gtrd.v7.1.symbols.gmt
-wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.v7.1.symbols.gmt
+wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.v7.2.symbols.gmt
+wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.mirdb.v7.2.symbols.gmt
+wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.gtrd.v7.2.symbols.gmt
+wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.v7.2.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.cm.v7.2.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.cgn.v7.2.symbols.gmt
+
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.mf.v7.2.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.cc.v7.2.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.bp.v7.2.symbols.gmt
+wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.hpo.v7.2.symbols.gmt
+
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c6.all.v7.2.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c7.all.v7.2.symbols.gmt
+wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c8.all.v7.2.symbols.gmt
+
+wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/h.all.v7.2.symbols.gmt