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Incorporate UMLS_UniProtKB mappings #361

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@gaurav gaurav commented Oct 16, 2024

This PR incorporates the UMLS_UniProtKB mappings from https://github.com/cbizon/UMLS_UniProtKB into the gene and protein concords so they can be incorporated into Babel. We only use UMLS/NCBIGene and UMLS/UniProtKB mappings -- we do NOT currently include NCBIGene/UniProtKB mappings for use in the GeneProtein conflation, because we get those from UniProtKB and should include these mappings anyway.

Note also that we could expect the number of duplicate IDs to go up if we are ingesting some of these UMLS identifiers in the chemical build as well.

WIP: needs to be tested.

@gaurav gaurav mentioned this pull request Oct 21, 2024
Base automatically changed from babel-1.8 to master November 2, 2024 18:52
@gaurav gaurav marked this pull request as ready for review November 9, 2024 05:07
@gaurav gaurav requested a review from cbizon November 9, 2024 05:07
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