Update following experimentHub update

UCLouvain-CBIO · Oct 4, 2024 · 4f8cd55 · 4f8cd55
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commit 4f8cd55
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Showing 3 changed files with 3 additions and 7 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -38,7 +38,7 @@ Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.3.2
 Depends:
     R (>= 4.3),
-    CTdata (>= 1.5.3)
+    CTdata (>= 1.5.2)
 Imports:
     BiocGenerics,
     ComplexHeatmap,

diff --git a/R/embryos_mean_methylation.R b/R/embryos_mean_methylation.R
@@ -48,9 +48,7 @@ embryos_mean_methylation <- function(genes = NULL,
                                      include_CTP = FALSE, 
                                      values_only = FALSE) {
     suppressMessages({
-        #database <- CTdata::mean_methylation_in_FGC()
-        load("/storage/research/dduv/cbio-lg/cluster/Packages/CTdata/eh_data/mean_methylation_in_embryo.rda")
-        database <- mean_methylation_in_embryo
+        database <- CTdata::mean_methylation_in_embryo()
     })
 
     database <- subset_database(genes, database, include_CTP)

diff --git a/R/fetal_germcells_mean_methylation.R b/R/fetal_germcells_mean_methylation.R
@@ -38,9 +38,7 @@ fetal_germcell_mean_methylation <- function(genes = NULL,
                                             include_CTP = FALSE, 
                                             values_only = FALSE) {
     suppressMessages({
-        #database <- CTdata::mean_methylation_in_FGC()
-        load("/storage/research/dduv/cbio-lg/cluster/Packages/CTdata/eh_data/mean_methylation_in_FGC.rda")
-        database <- mean_methylation_in_FGC
+        database <- CTdata::mean_methylation_in_FGC()
     })
 
     database <- subset_database(genes, database, include_CTP)