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fix typo
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lgatto committed Aug 10, 2020
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2 changes: 1 addition & 1 deletion 70-intro-bioinformatics.Rmd
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Expand Up @@ -632,7 +632,7 @@ BiocManager::install("UCLouvain-CBIO/rWSBIM1207")
`annot` respectively and familiarise yourself with the content of
the two new tables.

3. Convert the counts data into a long table format and annotation
3. Convert the counts data into a long table format and annotate
each sample using the experimental design.

4. Identity the three transcript identifiers that have the highest
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4 changes: 2 additions & 2 deletions docs/index.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2020-05-20" />
<meta name="date" content="2020-08-10" />

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<a href="sec-dataorg.html"><button class="btn btn-default">Next</button></a>
</p>
<p class="build-date">Page built:
2020-05-20
2020-08-10
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4 changes: 2 additions & 2 deletions docs/sec-anx.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2020-05-20" />
<meta name="date" content="2020-08-10" />

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<a href="session-information.html"><button class="btn btn-default">Next</button></a>
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<p class="build-date">Page built:
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2020-08-10
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6 changes: 3 additions & 3 deletions docs/sec-bioinfo.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2020-05-20" />
<meta name="date" content="2020-08-10" />

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<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">BiocManager<span class="op">::</span><span class="kw">install</span>(<span class="st">"UCLouvain-CBIO/rWSBIM1207"</span>)</code></pre></div>
<ol start="2" style="list-style-type: decimal">
<li><p>Import the data from two tab-separated files into R. The full paths to the two files can be accessed with <code>kem.tsv()</code>. Read <code>?kem</code> for details on the content of the two files. In brief, the <code>kem_counts.tsv</code> file contains RNA-Seq expression counts for 13 genes and 18 samples and <code>kem_annot.tsv</code> contains annotation about each sample. Read the data into two <code>tibbles</code> names <code>kem</code> and <code>annot</code> respectively and familiarise yourself with the content of the two new tables.</p></li>
<li><p>Convert the counts data into a long table format and annotation each sample using the experimental design.</p></li>
<li><p>Convert the counts data into a long table format and annotate each sample using the experimental design.</p></li>
<li><p>Identity the three transcript identifiers that have the highest expression count over all samples.</p></li>
<li><p>Visualise the distribution of the expression for the three transcripts selected above in cell types A and B under both treatments.</p></li>
<li><p>For all genes, calculate the mean intensities in each experimental group (as defined by the <code>cell_type</code> and <code>treatment</code> variables).</p></li>
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<p class="build-date">Page built:
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2020-08-10
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4 changes: 2 additions & 2 deletions docs/sec-ccl.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2020-05-20" />
<meta name="date" content="2020-08-10" />

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<p class="build-date">Page built:
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4 changes: 2 additions & 2 deletions docs/sec-dataorg.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2020-05-20" />
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4 changes: 2 additions & 2 deletions docs/sec-dplyr.html
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<meta name="author" content="Laurent Gatto" />

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4 changes: 2 additions & 2 deletions docs/sec-join.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2020-05-20" />
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6 changes: 3 additions & 3 deletions docs/sec-prog.html
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<meta name="author" content="Laurent Gatto" />

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## }
## return(sum(res))
## }
## &lt;bytecode: 0x55f5741b28c0&gt;</code></pre>
## &lt;bytecode: 0x55686215ea40&gt;</code></pre>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">set.seed</span>(1L)
<span class="kw">fun</span>(<span class="dv">5</span>, <span class="dv">15</span>)</code></pre></div>
<pre><code>## [1] 4825.278</code></pre>
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4 changes: 2 additions & 2 deletions docs/sec-rr.html
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4 changes: 2 additions & 2 deletions docs/sec-startdata.html
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4 changes: 2 additions & 2 deletions docs/sec-startr.html
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4 changes: 2 additions & 2 deletions docs/sec-vis.html
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4 changes: 2 additions & 2 deletions docs/session-information.html
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