processing vignette 'depmap.Rmd' failed with diagnostics:

Vignette re-building failed.

Failed to install 'depmap' from local:

Process completed with exit code 1.

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

No files were found with the provided path: check. No artifacts will be uploaded.

unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/windows/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/windows/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.5:

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:

harfbuzz 9.0.0 is already installed and up-to-date. To reinstall 9.0.0, run: brew reinstall harfbuzz

macOS's Gatekeeper has been disabled for this Cask

unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5: