Merge pull request #9 from USFWS/emma-dev

Emma dev
USFWS · Oct 31, 2024 · 589d152 · 589d152
2 parents e7a4a70 + 5926700
commit 589d152
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Showing 25 changed files with 17,237 additions and 2 deletions.
diff --git a/docs/_emma.qmd b/docs/_emma.qmd
diff --git a/docs/_extensions/jmgirard/embedpdf/.DS_Store b/docs/_extensions/jmgirard/embedpdf/.DS_Store
diff --git a/docs/_extensions/jmgirard/embedpdf/_extension.yml b/docs/_extensions/jmgirard/embedpdf/_extension.yml
@@ -0,0 +1,8 @@
+title: embedpdf
+author: Jeffrey Girard
+version: 0.4.1
+quarto-required: ">=1.3.0"
+contributes:
+  shortcodes:
+    - embedpdf.lua
+
diff --git a/docs/_extensions/jmgirard/embedpdf/embedpdf.lua b/docs/_extensions/jmgirard/embedpdf/embedpdf.lua
@@ -0,0 +1,65 @@
+function pdf(args, kwargs)
+  local data = pandoc.utils.stringify(args[1]) or pandoc.utils.stringify(kwargs['file'])
+  local width = pandoc.utils.stringify(kwargs['width'])
+  local height = pandoc.utils.stringify(kwargs['height'])
+  local border = pandoc.utils.stringify(kwargs['border'])
+  local class = pandoc.utils.stringify(kwargs['class'])
+  local image = pandoc.utils.stringify(kwargs['image'])
+  local image_force = pandoc.utils.stringify(kwargs['image_force'])
+  local image_width = pandoc.utils.stringify(kwargs['image_width'])
+  local image_height = pandoc.utils.stringify(kwargs['image_height'])
+  local image_border = pandoc.utils.stringify(kwargs['image_border'])
+  local image_class = pandoc.utils.stringify(kwargs['image_class'])
+
+  if width ~= '' then
+    width = 'width="' .. width .. '" '
+  end
+
+  if height ~= '' then
+    height = 'height="' .. height .. '" '
+  end
+
+  if border ~= '' then
+    border = 'border="' .. border .. '" '
+  end
+
+  if class ~= '' then
+    class = 'class="' .. class .. '" '
+  end
+
+  if image_width ~= '' then
+    image_width = 'width="' .. image_width .. '" '
+  end
+
+  if image_height ~= '' then
+    image_height = 'height="' .. image_height .. '" '
+  end
+
+  if image_border ~= '' then
+    image_border = 'border="' .. image_border .. '" '
+  end
+
+  if image_class ~= '' then
+    image_class = 'class="' .. image_class .. '" '
+  end
+
+  -- detect html
+  if quarto.doc.isFormat("html:js") then
+    if image_force == 'TRUE' then
+      return pandoc.RawInline('html', '<a href="' .. data .. '" download><img src="' .. image .. '" ' .. image_width .. image_height .. image_class .. image_border .. ' /></a>')
+    end
+    if image ~= '' then
+      return pandoc.RawInline('html', '<object data="' .. data .. '" type="application/pdf"' .. width .. height .. class .. border .. '><a href="' .. data .. '" download><img src="' .. image .. '" ' .. image_width .. image_height .. image_class .. image_border .. ' /></a></object>')
+    else
+      return pandoc.RawInline('html', '<object data="' .. data .. '" type="application/pdf"' .. width .. height .. class .. border .. '><a href="' .. data .. '" download>Download PDF file.</a></object>')
+    end
+  else
+    return pandoc.Null()
+  end
+
+end
+
+-- Add alias shortcode
+function embedpdf(...)
+  return pdf(...)
+end
diff --git a/docs/data/csv/compiled_witch_data.csv b/docs/data/csv/compiled_witch_data.csv
diff --git a/docs/data/xlsx/witch_survey.xlsx b/docs/data/xlsx/witch_survey.xlsx
diff --git a/docs/images/casper_graphic.png b/docs/images/casper_graphic.png
diff --git a/docs/images/data_wrangle.jpg b/docs/images/data_wrangle.jpg
diff --git a/docs/images/frank_stein_graphic.png b/docs/images/frank_stein_graphic.png
diff --git a/docs/images/qc_2.jpg b/docs/images/qc_2.jpg
diff --git a/docs/images/qc_6.jpg b/docs/images/qc_6.jpg
diff --git a/docs/images/qc_7.jpg b/docs/images/qc_7.jpg
diff --git a/docs/images/report.pdf b/docs/images/report.pdf
diff --git a/docs/images/tidy_graphic.png b/docs/images/tidy_graphic.png
diff --git a/docs/images/why_tidy_data.jpg b/docs/images/why_tidy_data.jpg
diff --git a/docs/images/witch_broom.png b/docs/images/witch_broom.png
diff --git a/docs/images/witch_data_cleanup.png b/docs/images/witch_data_cleanup.png
diff --git a/docs/images/witch_eda.jpg b/docs/images/witch_eda.jpg
diff --git a/docs/images/witch_import.jpg b/docs/images/witch_import.jpg
diff --git a/docs/images/witch_melting.png b/docs/images/witch_melting.png
diff --git a/docs/images/witch_preserve.jpg b/docs/images/witch_preserve.jpg
diff --git a/docs/images/witch_tidying.jpg b/docs/images/witch_tidying.jpg
diff --git a/docs/images/workbook_sc.png b/docs/images/workbook_sc.png
diff --git a/docs/lua/output-line-highlight.lua b/docs/lua/output-line-highlight.lua
@@ -0,0 +1,22 @@
+function highlight(line_number)
+  local highlighter = {
+    CodeBlock = function(block)
+      if block.classes:includes('highlight') then
+        block.classes:insert('has-line-highlights')
+        block.attributes["code-line-numbers"] = line_number
+        return block
+      end
+  end
+  }
+  return highlighter
+end
+
+
+function Div(el)
+  if FORMAT == 'revealjs' then
+    if el.classes:includes('cell') then
+      line_number = tostring(el.attributes["output-line-numbers"])
+      return el:walk(highlight(line_number))
+    end
+  end
+end
diff --git a/docs/scss/custom-dark.scss b/docs/scss/custom-dark.scss
@@ -17,11 +17,11 @@ $Scary: "Eater", serif;
 $blue: #02426D;
 $light-blue: #A3DBFF;
 $white: #FFFFFF;
-$accent-yellow: #FFC94F;
+$accent-yellow-1: #FFC94F;
 $accent-dark-blue: #012137;
 $accent-orange: #F7885A;
 $accent-light-blue: #D1EDFF;
-$accent-yellow: #FFE4A7;
+$accent-yellow-2: #FFE4A7;
 $accent-champagne: #E9D3AD;
 $accent-blue: #007AC2;
 $accent-green: #265D3A;
@@ -36,6 +36,7 @@ $link-color: $light-blue;
 
 // code block styling
 $code-block-font-size: 0.5em;
+
 $code-block-border-left: $light-blue;
 // $code-block-bg: $accent-orange;
 // $code-block-color: $blue;
@@ -112,6 +113,10 @@ $code-block-border-left: $light-blue;
   font-size: 0.2em;
 }
 
+.medlarge {
+  font-size: 1.2em;
+}
+
 .large {
   font-size: 1.50em;
 }
@@ -139,6 +144,37 @@ $code-block-border-left: $light-blue;
   box-shadow: 4.2px 4.5px 2.5px rgba(65, 65, 65, 0.737);
 }
 
+/* change font color */
+.yellow {
+  color: $accent-yellow-1;
+}
+
+/* change font color */
+.orange {
+  color: $accent-orange;
+}
+
+/* change font color */
+.champagne {
+  color: $accent-champagne;
+}
+
+/* marker font */
+.marker {
+  font-family: $Marker;
+}
+
+/* make bolder */
+.extrabold {
+  font-weight: 2000;
+  font-size: 1.2em;
+}
+
+/* style datatable */
+.custom-header-big {
+  background-color: white;
+}
+
 /* headers for DT::datatable() */
 .custom-header {
   color: black;