deploy: f28dbd4

class_model_s_e_i_r.html

@@ -103,6 +103,9 @@
 <tr class="memitem:a4c5761c8cd3952f3da21512293afec99"><td class="memItemLeft" align="right" valign="top"><a id="a4c5761c8cd3952f3da21512293afec99"></a>
 &#160;</td><td class="memItemRight" valign="bottom"><b>ModelSEIR</b> (std::string vname, epiworld_double prevalence, epiworld_double transmission_rate, epiworld_double avg_incubation_days, epiworld_double recovery_rate)</td></tr>
 <tr class="separator:a4c5761c8cd3952f3da21512293afec99"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a749d2d7b995dd385712e7ea8a35ebe28"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_model_s_e_i_r.html#a749d2d7b995dd385712e7ea8a35ebe28">initial_states</a> (std::vector&lt; double &gt; proportions_, std::vector&lt; int &gt; queue_={})</td></tr>
+<tr class="memdesc:a749d2d7b995dd385712e7ea8a35ebe28"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set up the initial states of the model.  <a href="class_model_s_e_i_r.html#a749d2d7b995dd385712e7ea8a35ebe28">More...</a><br /></td></tr>
+<tr class="separator:a749d2d7b995dd385712e7ea8a35ebe28"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="inherit_header pub_methods_classepiworld_1_1_model"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classepiworld_1_1_model')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classepiworld_1_1_model.html">epiworld::Model&lt; int &gt;</a></td></tr>
 <tr class="memitem:a9a2d8f67ad467c6d5793a855d2314a39 inherit pub_methods_classepiworld_1_1_model"><td class="memItemLeft" align="right" valign="top"><a id="a9a2d8f67ad467c6d5793a855d2314a39"></a>
 <a class="el" href="classepiworld_1_1_data_base.html">DataBase</a>&lt; int &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><b>get_db</b> ()</td></tr>
@@ -715,7 +718,58 @@
   </table>
   </dd>
 </dl>
-</div><h2 class="groupheader">Member Data Documentation</h2>
+</div><h2 class="groupheader">Member Function Documentation</h2>
+<a id="a749d2d7b995dd385712e7ea8a35ebe28"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a749d2d7b995dd385712e7ea8a35ebe28">&#9670;&nbsp;</a></span>initial_states()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TSeq &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="class_model_s_e_i_r.html">ModelSEIR</a>&lt; TSeq &gt;::initial_states </td>
+          <td>(</td>
+          <td class="paramtype">std::vector&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>proportions_</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::vector&lt; int &gt;&#160;</td>
+          <td class="paramname"><em>queue_</em> = <code>{}</code>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set up the initial states of the model. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">proportions_</td><td>Double vector with the following values:<ul>
+<li>0: Proportion of non-infected agents who are removed.</li>
+<li>1: Proportion of exposed agents to be set as infected. </li>
+</ul>
+</td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
 <a id="ac8fceb86169a04202b06aab749c78c7d"></a>
 <h2 class="memtitle"><span class="permalink"><a href="#ac8fceb86169a04202b06aab749c78c7d">&#9670;&nbsp;</a></span>update_exposed_seir</h2>
 

class_model_s_i_r-members.html

@@ -140,7 +140,7 @@
   <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_virus</b>(size_t id) (defined in <a class="el" href="classepiworld_1_1_model.html">epiworld::Model&lt; int &gt;</a>)</td><td class="entry"><a class="el" href="classepiworld_1_1_model.html">epiworld::Model&lt; int &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
   <tr bgcolor="#f0f0f0"><td class="entry"><b>get_viruses</b>() const (defined in <a class="el" href="classepiworld_1_1_model.html">epiworld::Model&lt; int &gt;</a>)</td><td class="entry"><a class="el" href="classepiworld_1_1_model.html">epiworld::Model&lt; int &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
   <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>global_actions</b> (defined in <a class="el" href="classepiworld_1_1_model.html">epiworld::Model&lt; int &gt;</a>)</td><td class="entry"><a class="el" href="classepiworld_1_1_model.html">epiworld::Model&lt; int &gt;</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>initial_states</b>(std::vector&lt; double &gt; proportions_, std::vector&lt; int &gt; queue_) (defined in <a class="el" href="class_model_s_i_r.html">ModelSIR&lt; TSeq &gt;</a>)</td><td class="entry"><a class="el" href="class_model_s_i_r.html">ModelSIR&lt; TSeq &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_model_s_i_r.html#add6b7af95b87bef7f661f0ec90945821">initial_states</a>(std::vector&lt; double &gt; proportions_, std::vector&lt; int &gt; queue_={})</td><td class="entry"><a class="el" href="class_model_s_i_r.html">ModelSIR&lt; TSeq &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
   <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_directed</b>() const (defined in <a class="el" href="classepiworld_1_1_model.html">epiworld::Model&lt; int &gt;</a>)</td><td class="entry"><a class="el" href="classepiworld_1_1_model.html">epiworld::Model&lt; int &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
   <tr><td class="entry"><a class="el" href="classepiworld_1_1_model.html#a2c4ac58e918e9e8dc2e58be6521d8827">is_queuing_on</a>() const</td><td class="entry"><a class="el" href="classepiworld_1_1_model.html">epiworld::Model&lt; int &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classepiworld_1_1_model.html#a4761b43494d081f2f7bd2443ea6cb2db">load_agents_entities_ties</a>(std::string fn, int skip)</td><td class="entry"><a class="el" href="classepiworld_1_1_model.html">epiworld::Model&lt; int &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>

class_model_s_i_r.html

@@ -101,9 +101,9 @@
 <tr class="memitem:a315f49a99c3b1d68ad26489495f46834"><td class="memItemLeft" align="right" valign="top"><a id="a315f49a99c3b1d68ad26489495f46834"></a>
 &#160;</td><td class="memItemRight" valign="bottom"><b>ModelSIR</b> (std::string vname, epiworld_double prevalence, epiworld_double transmission_rate, epiworld_double recovery_rate)</td></tr>
 <tr class="separator:a315f49a99c3b1d68ad26489495f46834"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad6f86e0f6aa3fa07e8df9d09c57b2037"><td class="memItemLeft" align="right" valign="top"><a id="ad6f86e0f6aa3fa07e8df9d09c57b2037"></a>
-void&#160;</td><td class="memItemRight" valign="bottom"><b>initial_states</b> (std::vector&lt; double &gt; proportions_, std::vector&lt; int &gt; queue_)</td></tr>
-<tr class="separator:ad6f86e0f6aa3fa07e8df9d09c57b2037"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:add6b7af95b87bef7f661f0ec90945821"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_model_s_i_r.html#add6b7af95b87bef7f661f0ec90945821">initial_states</a> (std::vector&lt; double &gt; proportions_, std::vector&lt; int &gt; queue_={})</td></tr>
+<tr class="memdesc:add6b7af95b87bef7f661f0ec90945821"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the initial states of the model.  <a href="class_model_s_i_r.html#add6b7af95b87bef7f661f0ec90945821">More...</a><br /></td></tr>
+<tr class="separator:add6b7af95b87bef7f661f0ec90945821"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="inherit_header pub_methods_classepiworld_1_1_model"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classepiworld_1_1_model')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classepiworld_1_1_model.html">epiworld::Model&lt; int &gt;</a></td></tr>
 <tr class="memitem:a9a2d8f67ad467c6d5793a855d2314a39 inherit pub_methods_classepiworld_1_1_model"><td class="memItemLeft" align="right" valign="top"><a id="a9a2d8f67ad467c6d5793a855d2314a39"></a>
 <a class="el" href="classepiworld_1_1_data_base.html">DataBase</a>&lt; int &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><b>get_db</b> ()</td></tr>
@@ -693,7 +693,57 @@
   </table>
   </dd>
 </dl>
-</div><hr/>The documentation for this class was generated from the following file:<ul>
+</div><h2 class="groupheader">Member Function Documentation</h2>
+<a id="add6b7af95b87bef7f661f0ec90945821"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#add6b7af95b87bef7f661f0ec90945821">&#9670;&nbsp;</a></span>initial_states()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TSeq &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="class_model_s_i_r.html">ModelSIR</a>&lt; TSeq &gt;::initial_states </td>
+          <td>(</td>
+          <td class="paramtype">std::vector&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>proportions_</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::vector&lt; int &gt;&#160;</td>
+          <td class="paramname"><em>queue_</em> = <code>{}</code>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set the initial states of the model. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">proportions_</td><td>Double vector with a single element:<ul>
+<li>The proportion of non-infected individuals who have recovered. </li>
+</ul>
+</td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
 <li>include/epiworld/models/<a class="el" href="sir_8hpp_source.html">sir.hpp</a></li>
 </ul>
 </div><!-- contents -->

functions.html

@@ -179,6 +179,10 @@ <h3><a id="index_g"></a>- g -</h3><ul>
 
 
 <h3><a id="index_i"></a>- i -</h3><ul>
+<li>initial_states()
+: <a class="el" href="class_model_s_e_i_r.html#a749d2d7b995dd385712e7ea8a35ebe28">ModelSEIR&lt; TSeq &gt;</a>
+, <a class="el" href="class_model_s_i_r.html#add6b7af95b87bef7f661f0ec90945821">ModelSIR&lt; TSeq &gt;</a>
+</li>
 <li>initial_states_fun
 : <a class="el" href="class_model.html#a6a3e893c076226874afbf0c0b20804ac">Model&lt; TSeq &gt;</a>
 </li>

functions_func.html

@@ -165,6 +165,10 @@ <h3><a id="index_g"></a>- g -</h3><ul>
 
 
 <h3><a id="index_i"></a>- i -</h3><ul>
+<li>initial_states()
+: <a class="el" href="class_model_s_e_i_r.html#a749d2d7b995dd385712e7ea8a35ebe28">ModelSEIR&lt; TSeq &gt;</a>
+, <a class="el" href="class_model_s_i_r.html#add6b7af95b87bef7f661f0ec90945821">ModelSIR&lt; TSeq &gt;</a>
+</li>
 <li>is_directed()
 : <a class="el" href="class_adj_list.html#a70e14a9f262278d028cecae547382049">AdjList</a>
 , <a class="el" href="classepiworld_1_1_adj_list.html#a70e14a9f262278d028cecae547382049">epiworld::AdjList</a>

latex/class_model_s_e_i_r.tex

@@ -37,7 +37,9 @@
 \item 
 \mbox{\Hypertarget{class_model_s_e_i_r_a4c5761c8cd3952f3da21512293afec99}\label{class_model_s_e_i_r_a4c5761c8cd3952f3da21512293afec99}} 
 {\bfseries Model\+SEIR} (std\+::string vname, epiworld\+\_\+double prevalence, epiworld\+\_\+double transmission\+\_\+rate, epiworld\+\_\+double avg\+\_\+incubation\+\_\+days, epiworld\+\_\+double recovery\+\_\+rate)
-\end{DoxyCompactItemize}
+\item 
+void \mbox{\hyperlink{class_model_s_e_i_r_a749d2d7b995dd385712e7ea8a35ebe28}{initial\+\_\+states}} (std\+::vector$<$ double $>$ proportions\+\_\+, std\+::vector$<$ int $>$ queue\+\_\+=\{\})
+\begin{DoxyCompactList}\small\item\em Set up the initial states of the model. \end{DoxyCompactList}\end{DoxyCompactItemize}
 \doxysubsection*{Public Attributes}
 \begin{DoxyCompactItemize}
 \item 
@@ -86,6 +88,29 @@ \subsubsection*{template$<$typename TSeq = int$>$\newline
 \end{DoxyParams}
 
 
+\doxysubsection{Member Function Documentation}
+\mbox{\Hypertarget{class_model_s_e_i_r_a749d2d7b995dd385712e7ea8a35ebe28}\label{class_model_s_e_i_r_a749d2d7b995dd385712e7ea8a35ebe28}} 
+\index{ModelSEIR$<$ TSeq $>$@{ModelSEIR$<$ TSeq $>$}!initial\_states@{initial\_states}}
+\index{initial\_states@{initial\_states}!ModelSEIR$<$ TSeq $>$@{ModelSEIR$<$ TSeq $>$}}
+\doxysubsubsection{\texorpdfstring{initial\_states()}{initial\_states()}}
+{\footnotesize\ttfamily template$<$typename TSeq $>$ \\
+void \mbox{\hyperlink{class_model_s_e_i_r}{Model\+SEIR}}$<$ TSeq $>$\+::initial\+\_\+states (\begin{DoxyParamCaption}\item[{std\+::vector$<$ double $>$}]{proportions\+\_\+,  }\item[{std\+::vector$<$ int $>$}]{queue\+\_\+ = {\ttfamily \{\}} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}}
+
+
+
+Set up the initial states of the model. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em proportions\+\_\+} & Double vector with the following values\+:
+\begin{DoxyItemize}
+\item 0\+: Proportion of non-\/infected agents who are removed.
+\item 1\+: Proportion of exposed agents to be set as infected. 
+\end{DoxyItemize}\\
+\hline
+\end{DoxyParams}
+
+
 \doxysubsection{Member Data Documentation}
 \mbox{\Hypertarget{class_model_s_e_i_r_ac8fceb86169a04202b06aab749c78c7d}\label{class_model_s_e_i_r_ac8fceb86169a04202b06aab749c78c7d}} 
 \index{ModelSEIR$<$ TSeq $>$@{ModelSEIR$<$ TSeq $>$}!update\_exposed\_seir@{update\_exposed\_seir}}

latex/class_model_s_i_r.tex

@@ -38,9 +38,8 @@
 \mbox{\Hypertarget{class_model_s_i_r_a315f49a99c3b1d68ad26489495f46834}\label{class_model_s_i_r_a315f49a99c3b1d68ad26489495f46834}} 
 {\bfseries Model\+SIR} (std\+::string vname, epiworld\+\_\+double prevalence, epiworld\+\_\+double transmission\+\_\+rate, epiworld\+\_\+double recovery\+\_\+rate)
 \item 
-\mbox{\Hypertarget{class_model_s_i_r_ad6f86e0f6aa3fa07e8df9d09c57b2037}\label{class_model_s_i_r_ad6f86e0f6aa3fa07e8df9d09c57b2037}} 
-void {\bfseries initial\+\_\+states} (std\+::vector$<$ double $>$ proportions\+\_\+, std\+::vector$<$ int $>$ queue\+\_\+)
-\end{DoxyCompactItemize}
+void \mbox{\hyperlink{class_model_s_i_r_add6b7af95b87bef7f661f0ec90945821}{initial\+\_\+states}} (std\+::vector$<$ double $>$ proportions\+\_\+, std\+::vector$<$ int $>$ queue\+\_\+=\{\})
+\begin{DoxyCompactList}\small\item\em Set the initial states of the model. \end{DoxyCompactList}\end{DoxyCompactItemize}
 \doxysubsection*{Additional Inherited Members}
 
 
@@ -65,6 +64,28 @@ \subsubsection*{template$<$typename TSeq = int$>$\newline
 \end{DoxyParams}
 
 
+\doxysubsection{Member Function Documentation}
+\mbox{\Hypertarget{class_model_s_i_r_add6b7af95b87bef7f661f0ec90945821}\label{class_model_s_i_r_add6b7af95b87bef7f661f0ec90945821}} 
+\index{ModelSIR$<$ TSeq $>$@{ModelSIR$<$ TSeq $>$}!initial\_states@{initial\_states}}
+\index{initial\_states@{initial\_states}!ModelSIR$<$ TSeq $>$@{ModelSIR$<$ TSeq $>$}}
+\doxysubsubsection{\texorpdfstring{initial\_states()}{initial\_states()}}
+{\footnotesize\ttfamily template$<$typename TSeq $>$ \\
+void \mbox{\hyperlink{class_model_s_i_r}{Model\+SIR}}$<$ TSeq $>$\+::initial\+\_\+states (\begin{DoxyParamCaption}\item[{std\+::vector$<$ double $>$}]{proportions\+\_\+,  }\item[{std\+::vector$<$ int $>$}]{queue\+\_\+ = {\ttfamily \{\}} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}}
+
+
+
+Set the initial states of the model. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em proportions\+\_\+} & Double vector with a single element\+:
+\begin{DoxyItemize}
+\item The proportion of non-\/infected individuals who have recovered. 
+\end{DoxyItemize}\\
+\hline
+\end{DoxyParams}
+
+
 The documentation for this class was generated from the following file\+:\begin{DoxyCompactItemize}
 \item 
 include/epiworld/models/sir.\+hpp\end{DoxyCompactItemize}