Fix variable reference (#16)

* Fix variable reference

* Remove website-related content

* Add commit and push after sorting

Co-authored-by: Jelle Treep <[email protected]>

* fix typo

---------

Co-authored-by: Jelle Treep <[email protected]>

.github/workflows/create-mkdocs.yml → .github/workflows/sort_readme.yml

@@ -17,19 +17,17 @@ jobs:
       - name: sort readme # run the run.py to get the latest data
         run: |
           python sort.py
-      - name: Deploy main
-        uses: JamesIves/[email protected]
+          
+       - name: Commit files
+         run: |
+           git config --local user.email "[email protected]"
+           git config --local user.name "GitHub Utrecht University"
+           git add .
+           git commit -m "sort README"
+        continue-on-error: true
+      - name: Push changes
+        uses: ad-m/github-push-action@master
         with:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-          BRANCH: main
-          FOLDER: .
-      - name: Build
-        run: |
-          sed 's/docs\/img\//img\//g' README.md > docs/index.md
-          mkdocs build
-      - name: Deploy pages
-        uses: JamesIves/[email protected]
-        with:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-          BRANCH: gh-pages
-          FOLDER: site
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+        continue-on-error: true
+

README.md

@@ -71,7 +71,7 @@ A curated list of awesome research code, software, manuals, and more on Git, dev
 - [Ricgraph](https://github.com/UtrechtUniversity/ricgraph) - With Ricgraph, you can create a graph from research information that is stored in various source systems. You can explore this graph and discover relations you were not aware of. For code, extensive documentation and videos follow the link.
 - [ShellChron](https://github.com/nielsjdewinter/ShellChron) - R package for constructing age models based on stable oxygen isotope records from accretionary carbonate archives
 - [Stitch](https://github.com/snijderlab/stitch) - A program for de novo sequencing of antibodies/proteins based on massspectrometry data.
-- [StratPal](https://github.com/MindTheGap-ERC/StratPal/) - R package to build modeling pipelines for paleontology
+- [StratPal](https://github.com/MindTheGap-ERC/StratPal) - R package to build modeling pipelines for paleontology
 - [text_explainability](https://git.science.uu.nl/m.j.robeer/text_explainability) - A generic explainability architecture for explaining text machine learning models.
 - [text_sensitivity](https://git.science.uu.nl/m.j.robeer/text_sensitivity) - Extension of text_explainability for sensitivity testing (robustness, fairness).