Dev/setup jatic cicd #22
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| # This is a basic workflow to help you get started with Actions | |
| name: Unit Testing | |
| # Controls when the action will run. | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the master branch | |
| push: | |
| branches: | |
| - master | |
| - release | |
| pull_request: | |
| branches: | |
| - master | |
| - release | |
| - update-to-v* | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| defaults: | |
| run: | |
| shell: bash | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| # NOTE: Github actions does not support anchors apparently. Forgive duplication of job | |
| # steps. | |
| jobs: | |
| pytest: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9","3.10","3.11","3.12"] | |
| # Extras for included, optional plugin support (space-separated lists) | |
| opt-extra: [ | |
| "", # no extras | |
| "tools", | |
| ] | |
| # We want all python versions tested even if one of them happens to fail | |
| fail-fast: false | |
| container: python:${{ matrix.python-version }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| # Cache local python environment artifacts for the current python version | |
| # and poetry lockfile hash. | |
| - uses: actions/cache@v4 | |
| id: env-cache | |
| with: | |
| path: | | |
| ~/.cache | |
| key: python-${{ matrix.python-version }}-${{ hashFiles('poetry.lock') }}-${{ matrix.opt-extra }} | |
| restore-keys: | | |
| python-${{ matrix.python-version }}-${{ hashFiles('poetry.lock') }} | |
| - name: Setup Environment | |
| uses: ./.github/actions/test-stage | |
| with: | |
| extras: "${{ matrix.opt-extra }}" | |
| - name: Unit Testing | |
| run: poetry run pytest | |
| - name: CodeCov report submission | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: true | |
| files: coverage.xml | |
| flags: unittests | |
| notebooks: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| notebook-file: [ | |
| "atari_deepRL_saliency.ipynb", | |
| "DRISE.ipynb", | |
| "MNIST_scikit_saliency.ipynb", | |
| "OcclusionSaliency.ipynb", | |
| "Radial_Image_Perturbation.ipynb", | |
| "SimilarityScoring.ipynb", | |
| "SuperPixelSaliency.ipynb", | |
| "VIAME_OcclusionSaliency.ipynb", | |
| "SerializedDetectionSaliency.ipynb", | |
| # Model comparison example is excluded due to computational complexity | |
| #"ModelComparisonWithSaliency.ipynb", | |
| ] | |
| # We want all python versions tested even if one of them happens to fail | |
| fail-fast: false | |
| # Just one python version, using our base supported version. | |
| container: | |
| image: python:3.9 | |
| options: "--shm-size 2GB" | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| # Cache local python environment artifacts for the current python version | |
| # and poetry lockfile hash. | |
| - uses: actions/cache@v2 | |
| id: env-cache | |
| with: | |
| path: | | |
| ~/.cache | |
| # Using a different key due to additional things the notebook | |
| # examples ad-hoc install. | |
| key: python-3.9-${{ hashFiles('poetry.lock') }}-Examples | |
| restore-keys: | | |
| python-3.9-${{ hashFiles('poetry.lock') }} | |
| - name: Setup Environment | |
| uses: ./.github/actions/test-stage | |
| with: | |
| extras: "tools example_deps" | |
| - uses: actions/cache@v2 | |
| id: notebook-data-cache | |
| with: | |
| path: | | |
| ~/.cache/ | |
| examples/data/ | |
| key: python-3.9-${{ hashFiles('poetry.lock') }}-ExampleData-${{ matrix.notebook-file }} | |
| # pretty unique, no restore-keys. | |
| - name: Run Notebook | |
| run: | | |
| cd examples | |
| poetry run papermill \ | |
| --progress-bar \ | |
| -k python3 \ | |
| --stdout-file - --stderr-file - \ | |
| "${{ matrix.notebook-file }}" /dev/null |