Addressed numerous package dependency vulnerabilities. #910

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Run time

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Job	Run time
typecheck	1m 9s
unittests (3.8)	1m 17s
lint	1m 7s
unittests (3.8, tools)	1m 18s
unittests (3.9)	1m 25s
unittests (3.9, tools)	1m 35s
unittests (3.10)	1m 16s
unittests (3.10, tools)	1m 31s
unittests (3.11)	1m 11s
unittests (3.11, tools)	1m 31s
unittests (3.12)	1m 30s
unittests (3.12, tools)	1m 49s
	16m 39s