Addressed numerous package dependency vulnerabilities. #482
Workflow file for this run
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| name: CI Example Notebooks | |
| # Controls when the action will run. | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the master branch | |
| push: | |
| branches: | |
| - master | |
| - release | |
| pull_request: | |
| branches: | |
| - master | |
| - release | |
| - update-to-v* | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| run_notebook: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| notebook-file: [ | |
| "atari_deepRL_saliency.ipynb", | |
| "DRISE.ipynb", | |
| "MNIST_scikit_saliency.ipynb", | |
| "OcclusionSaliency.ipynb", | |
| "Radial_Image_Perturbation.ipynb", | |
| "SimilarityScoring.ipynb", | |
| "SuperPixelSaliency.ipynb", | |
| "VIAME_OcclusionSaliency.ipynb", | |
| "SerializedDetectionSaliency.ipynb", | |
| # Model comparison example is excluded due to computational complexity | |
| #"ModelComparisonWithSaliency.ipynb", | |
| ] | |
| # We want all python versions tested even if one of them happens to fail | |
| fail-fast: false | |
| # Just one python version, using our base supported version. | |
| container: | |
| image: python:3.8 | |
| options: "--shm-size 2GB" | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| # Cache local python environment artifacts for the current python version | |
| # and poetry lockfile hash. | |
| - uses: actions/cache@v2 | |
| id: env-cache | |
| with: | |
| # * Confirmed that the `.local` directory doesn't exist until the | |
| # `pip install --user` is invoked below, so we can be confident | |
| # that only our python stuff is being captured in this cache | |
| # (intentional). | |
| # * *Not* caching the actual virtualenv, just the cached packages for | |
| # installation -- Some packages used in examples have very large | |
| # installation sizes which does not compliment well our limited | |
| # cache GB allowance. | |
| path: | | |
| ~/.cache/pypoetry/artifacts/ | |
| ~/.cache/pypoetry/cache/ | |
| ~/.local | |
| # Using a different key due to additional things the notebook | |
| # examples ad-hoc install. | |
| key: python-3.8-${{ hashFiles('poetry.lock') }}-Examples | |
| restore-keys: | | |
| python-3.8-${{ hashFiles('poetry.lock') }} | |
| - name: Setup Environment | |
| # See: https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#example-using-a-public-action-in-a-subdirectory | |
| uses: Kitware/SMQTK-Core/.github/actions/python-poetry-setup@master | |
| - name: Install additional example extras requirements | |
| run: poetry install -E example_deps | |
| - uses: actions/cache@v2 | |
| id: notebook-data-cache | |
| with: | |
| path: | | |
| ~/.cache/torch/ | |
| examples/data/ | |
| key: python-3.8-${{ hashFiles('poetry.lock') }}-ExampleData-${{ matrix.notebook-file }} | |
| # pretty unique, no restore-keys. | |
| - name: Run Notebook | |
| env: | |
| NOTEBOOK_FILENAME: ${{ matrix.notebook-file }} | |
| run: | | |
| cd examples | |
| poetry run papermill \ | |
| --progress-bar \ | |
| -k python3 \ | |
| --stdout-file - --stderr-file - \ | |
| "${NOTEBOOK_FILENAME}" /dev/null |