Fix megalinter errors and warnings (mega-linter-runner --fix)

.github/ISSUE_TEMPLATE/bug_report.yml

@@ -2,75 +2,75 @@
 name: "🕷️ Bug report"
 description: Create a report to help us improve
 labels:
- - bug
+  - bug
 body:
- - type: dropdown
-   id: toolaffected
-   attributes:
-    label: Which tool is affected?
-    description: CZI Shrink is the GUI application while CZI Compress refers to the CLI tool.
-    multiple: false
-    options:
-     - CZI Compress
-     - CZI Shrink
-   validations:
-    required: true
+  - type: dropdown
+    id: toolaffected
+    attributes:
+      label: Which tool is affected?
+      description: CZI Shrink is the GUI application while CZI Compress refers to the CLI tool.
+      multiple: false
+      options:
+        - CZI Compress
+        - CZI Shrink
+    validations:
+      required: true
 
- - type: textarea
-   attributes:
-    label: Description
-    description: Describe the bug and add screenshots if possible/applicable.
-    placeholder: A clear and concise description of what the bug is.
-   validations:
-    required: true
+  - type: textarea
+    attributes:
+      label: Description
+      description: Describe the bug and add screenshots if possible/applicable.
+      placeholder: A clear and concise description of what the bug is.
+    validations:
+      required: true
 
- - type: textarea
-   attributes:
-    label: Steps to reproduce
-    description: Please include screenshots (if applicable) and relevant logs.
-    placeholder: |
-      1. Go to '...'
-      2. Click on '....'
-      3. Scroll down to '....'
-      4. See error
-   validations:
-    required: true
+  - type: textarea
+    attributes:
+      label: Steps to reproduce
+      description: Please include screenshots (if applicable) and relevant logs.
+      placeholder: |
+        1. Go to '...'
+        2. Click on '....'
+        3. Scroll down to '....'
+        4. See error
+    validations:
+      required: true
 
- - type: textarea
-   attributes:
-    label: Expected behavior
-    description: A clear and concise description of what you expected to happen.
-    placeholder: |
-      1. Go to '...'
-      2. Click on '....'
-      3. Scroll down to '....'
-      4. See error
-   validations:
-    required: true
+  - type: textarea
+    attributes:
+      label: Expected behavior
+      description: A clear and concise description of what you expected to happen.
+      placeholder: |
+        1. Go to '...'
+        2. Click on '....'
+        3. Scroll down to '....'
+        4. See error
+    validations:
+      required: true
 
- - type: dropdown
-   attributes:
-    label: OS
-    description: What operating system are you using?
-    multiple: false
-    options:
-     - Windows
-     - MacOS
-     - Linux
-   validations:
-    required: true
+  - type: dropdown
+    attributes:
+      label: OS
+      description: What operating system are you using?
+      multiple: false
+      options:
+        - Windows
+        - MacOS
+        - Linux
+    validations:
+      required: true
 
- - type: input
-   attributes:
-    label: OS Version
-    description: What version and flavor (if applicable) of your OS are you using?
-    placeholder: Ubuntu 23.10 | Sonoma 14.1.2 | Windows 11 23H2
-   validations:
-    required: true
+  - type: input
+    attributes:
+      label: OS Version
+      description: What version and flavor (if applicable) of your OS are you using?
+      placeholder: Ubuntu 23.10 | Sonoma 14.1.2 | Windows 11 23H2
+    validations:
+      required: true
 
- - type: textarea
-   attributes:
-    label: Other Context
-    description: Please add any other context that may be relevant.
-   validations:
-    required: false
+  - type: textarea
+    attributes:
+      label: Other Context
+      description: Please add any other context that may be relevant.
+    validations:
+      required: false

.github/PULL_REQUEST_TEMPLATE.md

@@ -1,4 +1,4 @@
-# STOP - Read this First!
+# STOP - Read this First
 Reporting a security vulnerability?  
 Check out the project's [security policy](https://github.com/zeiss/czicompress/security/policy).
 
@@ -24,7 +24,7 @@ Fixes # (issue)
 Describe the tests that you ran to verify your changes.  
 Provide instructions to reproduce.
 
-## Checklist:
+## Checklist
 
 - [ ] I followed the Contributing Guidelines.
 - [ ] I did a self-review.

.github/actions/cmake-build/action.yml

@@ -1,27 +1,27 @@
 ---
-name: 'CMake-Build'
-description: 'Install Dependencies + Configure CMake + Build'
+name: "CMake-Build"
+description: "Install Dependencies + Configure CMake + Build"
 inputs:
   path-cache:
-    description: 'Path to vcpkg cache directory'
+    description: "Path to vcpkg cache directory"
     required: true
   path-toolchain:
-    description: 'Path to vcpkg tool chain file'
+    description: "Path to vcpkg tool chain file"
     required: true
   os-id:
-    description: 'Operating System Identifier'
+    description: "Operating System Identifier"
     required: true
   build-type:
-    description: 'Build Configuration'
+    description: "Build Configuration"
     required: true
   package:
-    description: 'Using package manager for external dependencies'
+    description: "Using package manager for external dependencies"
     required: true
   platform:
-    description: 'OS platform'
+    description: "OS platform"
     required: true
   src-dir:
-    description: 'The directory with the sources'
+    description: "The directory with the sources"
     required: true
 runs:
   using: "composite"
@@ -44,9 +44,9 @@ runs:
       shell: bash
       working-directory: ${{inputs.src-dir}}
       run: |
-         # We install the following packages: eigen3, catch2, cli11. Installing them with vcpkg (and caching them)
-         # is faster than downloading and building them from source (which is the default behavior of the CZICompress-build-system).
-         vcpkg install --triplet ${{inputs.platform}} eigen3 catch2 cli11
+        # We install the following packages: eigen3, catch2, cli11. Installing them with vcpkg (and caching them)
+        # is faster than downloading and building them from source (which is the default behavior of the CZICompress-build-system).
+        vcpkg install --triplet ${{inputs.platform}} eigen3 catch2 cli11
 
     - name: Configure CMake
       shell: bash

.github/advanced-issue-labeler.yml

@@ -2,9 +2,9 @@
 policy:
   - section:
       - id: [toolaffected]
-        block-list: ['None', 'Other']
+        block-list: ["None", "Other"]
         label:
           - name: czicompress
-            keys: ['CZI Compress']
-          - name: 'czishrink'
-            keys: ['CZI Shrink']
+            keys: ["CZI Compress"]
+          - name: "czishrink"
+            keys: ["CZI Shrink"]

.github/codecov.yml

@@ -37,4 +37,4 @@ component_management:
       paths:
         - "czishrink/"
 comment:
-  layout: "header, diff, flags, components"  # show component info in the PR comment
+  layout: "header, diff, flags, components" # show component info in the PR comment

.github/workflows/czicompress_cmake.yml

@@ -3,9 +3,9 @@ name: CMake Build (czicompress)
 
 on:
   push:
-    branches: ["main"]  # run only when merge with main branch
+    branches: ["main"] # run only when merge with main branch
   pull_request:
-    branches: ["main"]  # run only when merge with main branch
+    branches: ["main"] # run only when merge with main branch
   workflow_dispatch: {}
 
 permissions:
@@ -26,33 +26,41 @@ jobs:
       fail-fast: false
       matrix:
         build: [Release, Debug]
-        config:  # Create matrix with combinations of compiler and options.
+        config: # Create matrix with combinations of compiler and options.
           # Notes:
           # The property 'package' is controlling whether the build-time-dependencies (i.e. eigen3, cli11, catch2) are pulled in via the system's package manager or via CMake at build-time.
           - {
-            name: windows-64-msvc-package-on,
-            os: windows-latest,
-            platform: x64-windows-static,
-            package: ON,
-            path-cache: '${{ github.workspace }}\vcpkg\installed',
-            path-toolchain: 'C:/vcpkg/scripts/buildsystems/vcpkg.cmake',
-            os-id: 'windows',
-          }
+              name: windows-64-msvc-package-on,
+              os: windows-latest,
+              platform: x64-windows-static,
+              package: ON,
+              path-cache: '${{ github.workspace }}\vcpkg\installed',
+              path-toolchain: "C:/vcpkg/scripts/buildsystems/vcpkg.cmake",
+              os-id: "windows",
+            }
           - {
-            name: ubuntu-package-off,
-            os: ubuntu-20.04,   # we want to use an older version in order to increase likelihood that binaries work on other distros
-            platform: x64-linux,
-            package: OFF,
-            path-cache: '/usr/local/share/vcpkg/installed',
-            path-toolchain: '/usr/local/share/vcpkg/scripts/buildsystems/vcpkg.cmake',
-            os-id: 'linux',
-          }
+              name: ubuntu-package-off,
+              os: ubuntu-20.04, # we want to use an older version in order to increase likelihood that binaries work on other distros
+              platform: x64-linux,
+              package: OFF,
+              path-cache: "/usr/local/share/vcpkg/installed",
+              path-toolchain: "/usr/local/share/vcpkg/scripts/buildsystems/vcpkg.cmake",
+              os-id: "linux",
+            }
         exclude:
           # From https://github.com/actions/runner/issues/1512
           - build: Debug
-            config: {name: ubuntu-package-off, os: ubuntu-20.04, platform: x64-linux, package: OFF, path-cache: '/usr/local/share/vcpkg/installed', path-toolchain: '/usr/local/share/vcpkg/scripts/buildsystems/vcpkg.cmake', os-id: 'linux'}
+            config:
+              {
+                name: ubuntu-package-off,
+                os: ubuntu-20.04,
+                platform: x64-linux,
+                package: OFF,
+                path-cache: "/usr/local/share/vcpkg/installed",
+                path-toolchain: "/usr/local/share/vcpkg/scripts/buildsystems/vcpkg.cmake",
+                os-id: "linux",
+              }
     steps:
-
       - name: Checkout the source codes.
         uses: actions/checkout@v4
 
@@ -64,7 +72,7 @@ jobs:
           build-type: ${{matrix.build}}
           package: ${{matrix.config.package}}
           platform: ${{matrix.config.platform}}
-          src-dir: '${{github.workspace}}/czicompress'
+          src-dir: "${{github.workspace}}/czicompress"
 
       - name: Run unit tests
         working-directory: ${{github.workspace}}/czicompress/build
@@ -77,8 +85,8 @@ jobs:
         if: ${{ (matrix.config.os == 'windows-latest') && (matrix.build == 'Debug') }}
         shell: pwsh
         run: |
-            choco install OpenCppCoverage -y
-            echo "C:\Program Files\OpenCppCoverage" >> $env:GITHUB_PATH
+          choco install OpenCppCoverage -y
+          echo "C:\Program Files\OpenCppCoverage" >> $env:GITHUB_PATH
 
       - name: Get Coverage
         if: ${{ (matrix.config.os == 'windows-latest') && (matrix.build == 'Debug') }}
@@ -100,23 +108,23 @@ jobs:
         if: matrix.build == 'Release'
         shell: bash
         run: |
-            set -e
-            mkdir ./czicompress-${{env.name}}
-            cp -R ./THIRD_PARTY_LICENSES_ARTIFACT_DISTRIBUTION.txt ./czicompress-${{env.name}}/
-            cp -R ./build/app/THIRD_PARTY_LICENSES.txt ./czicompress-${{env.name}}/
+          set -e
+          mkdir ./czicompress-${{env.name}}
+          cp -R ./THIRD_PARTY_LICENSES_ARTIFACT_DISTRIBUTION.txt ./czicompress-${{env.name}}/
+          cp -R ./build/app/THIRD_PARTY_LICENSES.txt ./czicompress-${{env.name}}/
 
       # gather the binaries
       - name: Prepare Linux binaries
         if: ${{ (matrix.config.os == 'ubuntu-20.04') && (matrix.build == 'Release') }}
         shell: bash
         run: |
-            cp ./build/app/czicompress ./build/capi/libczicompressc.so ./czicompress-${{env.name}}/
+          cp ./build/app/czicompress ./build/capi/libczicompressc.so ./czicompress-${{env.name}}/
 
       - name: Prepare Windows binaries
         if: ${{ (matrix.config.os == 'windows-latest') && (matrix.build == 'Release') }}
         shell: bash
         run: |
-            cp ./build/app/${{matrix.build}}/*.exe ./build/capi/${{matrix.build}}/libczicompressc.dll ./czicompress-${{env.name}}/
+          cp ./build/app/${{matrix.build}}/*.exe ./build/capi/${{matrix.build}}/libczicompressc.dll ./czicompress-${{env.name}}/
 
       # upload the build-results to artifacts-store
       - name: Upload artifacts

.github/workflows/czicompress_codeql.yml

@@ -47,13 +47,13 @@ jobs:
 
       - uses: ./.github/actions/cmake-build
         with:
-          path-cache: '/usr/local/share/vcpkg/installed'
-          path-toolchain: '/usr/local/share/vcpkg/scripts/buildsystems/vcpkg.cmake'
-          os-id: 'linux'
+          path-cache: "/usr/local/share/vcpkg/installed"
+          path-toolchain: "/usr/local/share/vcpkg/scripts/buildsystems/vcpkg.cmake"
+          os-id: "linux"
           build-type: Release
           package: ON
           platform: x64-linux
-          src-dir: '${{github.workspace}}/czicompress'
+          src-dir: "${{github.workspace}}/czicompress"
 
       - name: Perform CodeQL Analysis
         uses: github/codeql-action/analyze@v3

.github/workflows/czishrink_codeql.yml

@@ -16,7 +16,7 @@ on:
     #        │  │ │ │ │
     #        │  │ │ │ │
     #        *  * * * *
-    - cron: '30 2 * * 2'
+    - cron: "30 2 * * 2"
   workflow_dispatch: {}
 
 permissions: read-all
@@ -48,7 +48,7 @@ jobs:
           path: ${{ github.workspace }}/.nuget/packages
           key: ${{ runner.os }}-czishrink-nuget-${{ hashFiles('czishrink/**/packages.lock.json') }}
           restore-keys: |
-              ${{ runner.os }}-czishrink-nuget-
+            ${{ runner.os }}-czishrink-nuget-
 
       - name: Initialize CodeQL
         uses: github/codeql-action/init@v3