improve documentation - "coordinate systems" #555
Workflow file for this run
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| name: CMake | |
| on: | |
| push: | |
| branches: ["main"] | |
| pull_request: | |
| branches: ["main"] | |
| workflow_dispatch: | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| # Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.) | |
| build: [Release, Debug] | |
| os: [ubuntu-latest, windows-latest] | |
| # The CMake configure and build commands are platform agnostic and should work equally well on Windows or Mac. | |
| # You can convert this to a matrix build if you need cross-platform coverage. | |
| # See: https://docs.github.com/en/free-pro-team@latest/actions/learn-github-actions/managing-complex-workflows#using-a-build-matrix | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install dependencies (Windows) | |
| if: ${{ (matrix.OS == 'windows-latest') }} | |
| # on Windows, we rely on vcpkg to pull in dependencies | |
| shell: bash | |
| run: | | |
| # Temporary workaround for the vcpkg internal issue | |
| # See https://github.com/microsoft/vcpkg/issues/41199#issuecomment-2378255699 for details | |
| # shellcheck disable=SC2153 | |
| export SystemDrive=$SYSTEMDRIVE | |
| # shellcheck disable=SC2153 | |
| export SystemRoot=$SYSTEMROOT | |
| # shellcheck disable=SC2153 | |
| export windir=$WINDIR | |
| vcpkg install azure-storage-blobs-cpp:x64-windows-static | |
| vcpkg install azure-identity-cpp:x64-windows-static | |
| vcpkg install rapidjson 'curl[ssl]' --triplet x64-windows-static | |
| # for the ARM64 cross-compilation build, we also need to install the ARM64 versions of the dependencies | |
| vcpkg install azure-storage-blobs-cpp:arm64-windows-static | |
| vcpkg install azure-identity-cpp:arm64-windows-static | |
| vcpkg install rapidjson 'curl[ssl]' --triplet arm64-windows-static | |
| - name: Install dependencies (Linux) | |
| if: ${{ (matrix.OS == 'ubuntu-latest') }} | |
| # on Linux, we use apt to get our dependencies | |
| shell: bash | |
| run: | | |
| sudo apt-get install zlib1g-dev -y | |
| sudo apt-get install libpng-dev -y | |
| sudo apt-get install libfreetype6-dev -y | |
| sudo apt-get install rapidjson-dev -y | |
| sudo apt-get install libssl-dev -y | |
| vcpkg install azure-storage-blobs-cpp azure-identity-cpp | |
| - name: Install Azurite (for Azure SDK based stream tests) | |
| shell: bash | |
| run: | | |
| npm install --location=global azurite | |
| - name: Configure CMake (Windows x64) | |
| if: ${{ (matrix.OS == 'windows-latest') }} | |
| shell: pwsh | |
| run: | | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| # Note that we need to point CMake to the vcpkg-toolchain-file, and also specify the target triplet, c.f. https://learn.microsoft.com/en-us/vcpkg/concepts/triplets | |
| # since we aim for a static build. | |
| cmake -B "${{github.workspace}}/build" -A x64 -DCMAKE_BUILD_TYPE=${{matrix.build}} -DLIBCZI_BUILD_CZICMD=ON -DLIBCZI_BUILD_CURL_BASED_STREAM=ON -DLIBCZI_BUILD_AZURESDK_BASED_STREAM=ON -DLIBCZI_BUILD_PREFER_EXTERNALPACKAGE_LIBCURL=ON -DCMAKE_TOOLCHAIN_FILE="$env:VCPKG_INSTALLATION_ROOT/scripts/buildsystems/vcpkg.cmake" -DVCPKG_TARGET_TRIPLET=x64-windows-static | |
| - name: Configure CMake (Windows ARM64) | |
| if: ${{ (matrix.OS == 'windows-latest') }} | |
| shell: pwsh | |
| run: | | |
| # Configure for a cross-compilation to ARM64. | |
| # Note that since we are doing a cross compilation, we cannot execute code in order to determine platform | |
| # characteristics like endianess and whether unaligned access is allowed. Therefore, we need to set the following | |
| # variables manually: CRASH_ON_UNALIGNED_ACCESS=OFF and IS_BIG_ENDIAN=FALSE. | |
| cmake -B "${{github.workspace}}/arm64build" -A ARM64 -DCMAKE_BUILD_TYPE=${{matrix.build}} -DLIBCZI_BUILD_CZICMD=ON -DLIBCZI_BUILD_CURL_BASED_STREAM=ON -DLIBCZI_BUILD_AZURESDK_BASED_STREAM=ON -DLIBCZI_BUILD_PREFER_EXTERNALPACKAGE_LIBCURL=ON -DCMAKE_TOOLCHAIN_FILE="$env:VCPKG_INSTALLATION_ROOT/scripts/buildsystems/vcpkg.cmake" -DVCPKG_TARGET_TRIPLET=arm64-windows-static -DCRASH_ON_UNALIGNED_ACCESS=OFF -DIS_BIG_ENDIAN=FALSE | |
| - name: Configure CMake (Linux) | |
| if: ${{ (matrix.OS == 'ubuntu-latest') }} | |
| shell: bash | |
| run: | | |
| cmake -B "${{github.workspace}}/build" -DCMAKE_BUILD_TYPE=${{matrix.build}} -DLIBCZI_BUILD_CZICMD=ON -DLIBCZI_BUILD_CURL_BASED_STREAM=ON -DLIBCZI_BUILD_PREFER_EXTERNALPACKAGE_LIBCURL=OFF -DLIBCZI_BUILD_AZURESDK_BASED_STREAM=ON -DCMAKE_TOOLCHAIN_FILE="${VCPKG_INSTALLATION_ROOT}/scripts/buildsystems/vcpkg.cmake" | |
| - name: Build (Linux) | |
| if: ${{ (matrix.OS == 'ubuntu-latest') }} | |
| shell: bash | |
| run: cmake --build ${{github.workspace}}/build --config ${{matrix.build}} -j | |
| - name: Build (Windows x64) | |
| if: ${{ (matrix.OS == 'windows-latest') }} | |
| shell: pwsh | |
| run: cmake --build ${{github.workspace}}/build --config ${{matrix.build}} -j | |
| - name: Build (Windows ARM64) | |
| if: ${{ (matrix.OS == 'windows-latest') }} | |
| shell: pwsh | |
| run: cmake --build ${{github.workspace}}/arm64build --config ${{matrix.build}} -j | |
| - name: Test | |
| shell: bash | |
| working-directory: ${{github.workspace}}/build | |
| env: | |
| # This is the "default-Azurite-connection string", we put it here into the environment (so that it can be picked up by the unittest later on) | |
| AZURE_BLOB_STORE_CONNECTION_STRING: "DefaultEndpointsProtocol=http;AccountName=devstoreaccount1;AccountKey=Eby8vdM02xNOcqFlqUwJPLlmEtlCDXJ1OUzFT50uSRZ6IFsuFq2UVErCz4I6tq/K1SZFPTOtr/KBHBeksoGMGw==;BlobEndpoint=http://127.0.0.1:10000/devstoreaccount1;" | |
| run: | | |
| # What we do here: | |
| # - we create a test CZI file (using the CZIcmd executable) | |
| # - we start Azurite (in the background) | |
| # - we then upload the test CZI file to Azurite as a blob in the container "testcontainer" with name "testblob" | |
| # - we then run the unit-tests - the environment variable AZURE_BLOB_STORE_CONNECTION_STRING is used to configure the Azure SDK based stream tests | |
| # - finally, we kill the Azurite process | |
| # | |
| # find the CZIcmd executable (we just built it) | |
| czicmd="$(find . \( -name CZIcmd -o -name CZIcmd.exe \) -print0 | xargs -0 realpath)" | |
| mkdir -p azurite | |
| cd azurite | |
| # now use the CZIcmd executable to create a test CZI file | |
| "$czicmd" --command CreateCZI --createbounds "C0:2T0:2" --generatorpixeltype Gray8 --compressionopts "zstd1:ExplicitLevel=2;PreProcess=HiLoByteUnpack" --createsubblocksize "1024x1024" -o test --bitmapgenerator default | |
| # start Azurite in the background (we start only the blob-service, as we only need this for the tests) | |
| azurite-blob --inMemoryPersistence --silent & | |
| # create a blob container "testcontainer" | |
| az storage container create --name testcontainer --connection-string "$AZURE_BLOB_STORE_CONNECTION_STRING" | |
| # upload the test CZI file to the container | |
| az storage blob upload --container-name testcontainer --file "./test.czi" --name testblob --connection-string "$AZURE_BLOB_STORE_CONNECTION_STRING" | |
| cd .. | |
| #"$czicmd" --command PrintInformation --source-stream-class azure_blob_inputstream --source 'account=libczirwtestdata;containername=testcontainer;blobname=testblob;connectionstring=DefaultEndpointsProtocol\=http\;AccountName\=devstoreaccount1\;AccountKey\=Eby8vdM02xNOcqFlqUwJPLlmEtlCDXJ1OUzFT50uSRZ6IFsuFq2UVErCz4I6tq/K1SZFPTOtr/KBHBeksoGMGw\=\=\;BlobEndpoint\=http://127.0.0.1:10000/devstoreaccount1\;' | |
| # --propbag-source-stream-creation '{"AzureBlob_AuthenticationMode":"ConnectionString"}' | |
| # | |
| # Execute tests defined by the CMake configuration. | |
| # See https://cmake.org/cmake/help/latest/manual/ctest.1.html for more detail | |
| # Use debug flag to show all executed tests | |
| ctest --debug -C ${{matrix.build}} | |
| # note that we leave the Azurite process running, as we want to use it with the code-coverage step as well | |
| - name: Prepare CZICmd as artifact (Windows x64) | |
| working-directory: ${{github.workspace}}/build | |
| if: ${{ (matrix.OS == 'windows-latest') && (matrix.build == 'Release') }} | |
| shell: bash | |
| run: | | |
| mkdir release | |
| name="CZICmd-windows-x64-$(git describe --always)" | |
| mkdir "release/${name}" | |
| cp Src/CZICmd/Release/CZIcmd.exe "release/${name}/" | |
| echo "artifactName=${name}" >> "$GITHUB_ENV" | |
| echo "artifactPath=${{github.workspace}}/build/release/${name}" >> "$GITHUB_ENV" | |
| - name: Upload CZICmd as artifact (Linux) | |
| working-directory: ${{github.workspace}}/build | |
| if: ${{ (matrix.OS == 'ubuntu-latest') && (matrix.build == 'Release') }} | |
| shell: bash | |
| run: | | |
| mkdir release | |
| name="CZICmd-linux-x64-$(git describe --always)" | |
| mkdir "release/${name}" | |
| cp Src/CZICmd/CZIcmd "release/${name}/" | |
| echo "artifactName=${name}" >> "$GITHUB_ENV" | |
| echo "artifactPath=${{github.workspace}}/build/release/${name}" >> "$GITHUB_ENV" | |
| - name: Upload artifacts | |
| if: ${{ ( (matrix.OS == 'windows-latest') || (matrix.OS == 'ubuntu-latest') ) && (matrix.build == 'Release') }} | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| path: ${{ env.artifactPath }}/ | |
| name: ${{ env.artifactName }} | |
| - name: Prepare CZICmd as artifact (Windows ARM64) | |
| working-directory: ${{github.workspace}}/arm64build | |
| if: ${{ (matrix.OS == 'windows-latest') && (matrix.build == 'Release') }} | |
| shell: bash | |
| run: | | |
| mkdir release | |
| name="CZICmd-windows-arm64-$(git describe --always)" | |
| mkdir "release/${name}" | |
| cp Src/CZICmd/Release/CZIcmd.exe "release/${name}/" | |
| echo "artifactName=${name}" >> "$GITHUB_ENV" | |
| echo "artifactPath=${{github.workspace}}/arm64build/release/${name}" >> "$GITHUB_ENV" | |
| - name: Upload artifacts (Windows ARM64) | |
| if: ${{ (matrix.OS == 'windows-latest') && (matrix.build == 'Release') }} | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| path: ${{ env.artifactPath }}/ | |
| name: ${{ env.artifactName }} | |
| # Coverage collection based on https://about.codecov.io/blog/how-to-set-up-codecov-with-c-plus-plus-and-github-actions/ | |
| - name: Prepare Coverage | |
| if: ${{ (matrix.OS == 'windows-latest') && (matrix.build == 'Debug') }} | |
| run: | | |
| choco install OpenCppCoverage -y --no-progress | |
| echo "C:\Program Files\OpenCppCoverage" >> "$env:GITHUB_PATH" | |
| - name: Get Coverage | |
| if: ${{ (matrix.OS == 'windows-latest') && (matrix.build == 'Debug') }} | |
| working-directory: ${{github.workspace}}/build/Src/libCZI_UnitTests/${{matrix.build}} | |
| shell: cmd | |
| run: OpenCppCoverage.exe --export_type cobertura:${{github.workspace}}\coverage.xml --config_file "${{github.workspace}}\opencppcoverage.txt" -- libCZI_UnitTests.exe | |
| - name: Upload Coverage | |
| uses: codecov/codecov-action@v4 | |
| # Note: we want to upload coverage only for the upstream-repository, not for forks | |
| if: ${{ (github.repository == 'ZEISS/libczi') && (matrix.OS == 'windows-latest') && (matrix.build == 'Debug') }} | |
| with: | |
| files: ./coverage.xml | |
| fail_ci_if_error: true | |
| verbose: true | |
| # Only one flag to be safe with | |
| # https://docs.codecov.com/docs/flags#one-to-one-relationship-of-flags-to-uploads | |
| flags: ${{matrix.OS}} | |
| token: ${{ secrets.CODECOV_TOKEN }} |