Skip to content
View a-r-j's full-sized avatar
🦦
🦦
198 followers · 35 following

Achievements

Achievement: QuickdrawAchievement: Pull Sharkx3Achievement: Starstruckx3Achievement: Pair Extraordinairex2Achievement: YOLOAchievement: Arctic Code Vault Contributor

Achievements

Achievement: QuickdrawAchievement: Pull Sharkx3Achievement: Starstruckx3Achievement: Pair Extraordinairex2Achievement: YOLOAchievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@tlb-lab

Block or report a-r-j

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
a-r-j/README.md

Hi there 👋

  • 🔭 I’m a PhD student at the University of Cambridge. I work on deep learning applied to structural biology and drug discovery.

  • I'm currently doing things with proteins at Genentech / Roche / Prescient Design

  • Previously, I was a visiting researcher at EPFL and MILA, AI Resident at X - The Moonshot Factory (formerly Google X) and an ML Consultant at Relation Therapeutics.

  • 🌱 I’m currently developing Graphein, a data processing library for geometric deep learning in biology.

    • Graphein supports construction and featurisation of:
      • Protein structure graphs
      • Protein meshes
      • Small molecule graphs
      • RNA structure graphs
      • Protein-protein interaction graphs
      • Gene regulatory interaction graphs

  • 📫 How to reach me:

Pinned Loading

  1. graphein graphein Public

    Protein Graph Library

    Jupyter Notebook 1k 132

  2. ProteinWorkshop ProteinWorkshop Public

    Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)

    Python 203 16

  3. molstar/VSCoding-Sequence molstar/VSCoding-Sequence Public

    VSCode Extension for interactively visualising protein structure data in the editor

    TypeScript 101 9

  4. BioPandas/biopandas BioPandas/biopandas Public

    Working with molecular structures in pandas DataFrames

    Python 715 121

  5. CPDB CPDB Public

    Cython implementation of PDB -> DataFrame parsing

    Cython 22

  6. leojklarner/gauche leojklarner/gauche Public

    A Library for Gaussian Processes in Chemistry

    Jupyter Notebook 212 22