Merge pull request #4 from abbyevewilliams/1-tests-initial

Tests initial

.github/workflows/python-package.yaml

@@ -0,0 +1,37 @@
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
+
+name: Python package
+
+on:
+  push:
+    branches: [ "master" ]
+  pull_request:
+    branches: [ "master" ]
+  workflow_dispatch:
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest]
+
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v3
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip setuptools wheel
+        python -m pip install .[dev]
+        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+    - name: Lint with flake8
+      run: |
+        flake8 .
+    - name: Test with pytest
+      run: |
+        pytest

prototype.py

@@ -2,16 +2,19 @@
 import numpy as np
 import scipy.integrate
 
+
 def dose(t, X):
     return X
 
+
 def rhs(t, y, Q_p1, V_c, V_p1, CL, X):
     q_c, q_p1 = y
     transition = Q_p1 * (q_c / V_c - q_p1 / V_p1)
     dqc_dt = dose(t, X) - q_c / V_c * CL - transition
     dqp1_dt = transition
     return [dqc_dt, dqp1_dt]
 
+
 model1_args = {
     'name': 'model1',
     'Q_p1': 1.0,

setup.py

@@ -8,10 +8,11 @@ def get_version():
     """
     Get version number from the pkmodel module.
 
-    The easiest way would be to just ``import pkmodel ``, but note that this may
-    fail if the dependencies have not been installed yet. Instead, we've put
-    the version number in a simple version_info module, that we'll import here
-    by temporarily adding the oxrse directory to the pythonpath using sys.path.
+    The easiest way would be to just ``import pkmodel ``, but note that this
+    may fail if the dependencies have not been installed yet. Instead, we've
+    put the version number in a simple version_info module, that we'll import
+    here by temporarily adding the oxrse directory to the pythonpath using
+    sys.path.
     """
     import os
     import sys