This project investigated the potential of machine learning in complementing established techniques for identifying key genes involved in Type 2 Diabetes, a condition with a complex genetic background. DGE analysis showed significant dysregulation in 746 out of 18,484 genes. Machine learning models, specifically SVM, RF, LR, and XGBoost were evaluated on the RNA-Seq count dataset. The decision tree-based algorithm XGBoost outperformed other classifiers and SHAP analysis of this model helped identify top key genes. Raw count file: 2117ensemble.csv Clinical metadat: clin2117.csv GEO accession of dataset: GSE182117
-
Notifications
You must be signed in to change notification settings - Fork 0
abhijnarc/ML-Prediction-of-Diabetes-Biomarker-
Folders and files
Name | Name | Last commit message | Last commit date | |
---|---|---|---|---|
Repository files navigation
About
No description, website, or topics provided.
Resources
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published