convert options to yaml

abims-sbr · Aug 5, 2024 · e314e1a · e314e1a
1 parent 4e3c440
commit e314e1a
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/molecule/default/converge.yml b/molecule/default/converge.yml
@@ -12,7 +12,7 @@
         port: '4567'
         path: '/tmp/test-data'
         placeholders: [{key: 'key_string', value: 'value1'}, {key: 'key_link', value: '<a href="http://testplaceholder.com">my favorite link</a>'}]
-        conf_options: [{key: 'job_lifetime', value: '10080'}, {key: 'databases_widget', value: 'tree'}]
+        conf_options: [{key: 'job_lifetime', value: '10080'}, {key: 'databases_widget', value: 'tree'}, {key: 'options', value: {':blastn:': {':default:': ["-task blastn", "-evalue 1e-5"], ':short-seq:': ["-task blastn-short", "-evalue 1e-1"]}}}]
     sequenceserver_top_web_page_html_path: "/tmp/top_web_page.html"
     sequenceserver_bottom_web_page_html_path: "/tmp/bottom_web_page.html"
     sequenceserver_home_url: "http://myfavoritewebsite.com"

diff --git a/templates/sequenceserver.conf.j2 b/templates/sequenceserver.conf.j2
@@ -3,7 +3,7 @@
 {% if item.conf_options is defined and item.conf_options %}
 {% for option in item.conf_options %}
 {% if option.key is defined and option.key and option.value is defined and option.value %}
-:{{ option.key }}: '{{ option.value }}'
+:{{ option.key }}: '{{ option.value | to_yaml }}'
 {% endif %}
 {% endfor %}
 {% endif %}