Discussions

• 1 You must be logged in to vote

  🙏

  Hybrid assembly: getting list of circular contigs.

  Somebodyatthdoor asked May 30, 2023 in Q&A · Closed · Unanswered

  

  

  1
• 1 You must be logged in to vote

  🙏

  Before nuclear genome assembly, is it recommended to remove reads of organelles (mitochondria, chloroplasts) and plasmids?

  maruiqi0710 asked May 17, 2023 in Q&A · Answered

  

  

  1
• 1 You must be logged in to vote

  🙏

  Skip reads correction step in metaSPAdes

  mchialva asked May 10, 2023 in Q&A · Unanswered

  

  

  1
• 1 You must be logged in to vote

  🙏

  Metagenome: Co-Assembly and Hybrid

  mscarbor asked Apr 25, 2023 in Q&A · Unanswered

  

  

  1
• 1 You must be logged in to vote

  🙏

  Different k-mer combination generate different results

  Niohuruzh asked Apr 18, 2023 in Q&A · Unanswered

  

  

  7
• 1 You must be logged in to vote

  🙏

  Question about metagenomic assembly

  sf202303 asked Mar 29, 2023 in Q&A · Unanswered

  

  

  9
• 1 You must be logged in to vote

  🙏

  Can I set K to prevent memory overflow

  xug15 asked Mar 31, 2023 in Q&A · Unanswered

  

  

  1
• 2 You must be logged in to vote

  🙏

  metaviralspades output - standard metaspades output not found

  rbtoscan asked Mar 14, 2023 in Q&A · Unanswered

  

  

  2
• 1 You must be logged in to vote

  💬

  Question about the results

  AndyLy2Zy started Mar 25, 2023 in General

  

  

  1
• 1 You must be logged in to vote

  🙏

  BinSPreader read acquisition question

  aababc1 asked May 25, 2022 in Q&A · Answered

  

  

  

  

  8
• 1 You must be logged in to vote

  💬

  Spades can be run for co-assembly?

  songmj86 started Mar 16, 2023 in General

  

  

  1
• 1 You must be logged in to vote

  💡

  Perl (legacy?) Code

  RPINerd started Feb 22, 2023 in Ideas

  

  

  2
• 1 You must be logged in to vote

  🙏

  Warning in the error correction step

  Unaimend asked Mar 12, 2023 in Q&A · Answered

  

  

  2
• 1 You must be logged in to vote

  🙏

  Huge difference in assembly stats between metaSPAdes and metaviralSPAdes when assembling gut viromes

  ilnamkang asked Mar 8, 2023 in Q&A · Answered

  

  

  

  

  3
• 1 You must be logged in to vote

  🙏

  == Error == system call for: "" finished abnormally, OS return value: 21

  input Errors due to invalid / malformed / unsuitable input

  AMosca96 asked Mar 3, 2023 in Q&A · Unanswered

  

  

  3
• 1 You must be logged in to vote

  🙏

  Moinalloc warning

  Unaimend asked Mar 6, 2023 in Q&A · Answered

  

  

  4
• 1 You must be logged in to vote

  🙏

  Which spades subcommand to use for full synthetic promoters?

  biomystery asked Feb 22, 2023 in Q&A · Unanswered

  

  

  2
• 1 You must be logged in to vote

  🙏

  Does spades process samples the same order entered?

  mr-eyes asked Feb 19, 2023 in Q&A · Answered

  

  

  2
• 2 You must be logged in to vote

  🙏

  Question: filename of corrected reads

  bernt-matthias asked Feb 12, 2023 in Q&A · Answered

  

  

  8
• 2 You must be logged in to vote

  💬

  Multiple contigs

  MonicaSteffi started Feb 14, 2023 in General

  

  

  0
• 1 You must be logged in to vote

  🙏

  Duplicate contigs

  MonicaSteffi asked Feb 13, 2023 in Q&A · Answered

  

  

  

  

  2
• 1 You must be logged in to vote

  🙏

  scaffolds.fasta deleted, can I regenerate it from SPAdes outputs?

  jamesck2 asked Feb 8, 2023 in Q&A · Answered

  

  

  4
• 1 You must be logged in to vote

  🙏

  Spades Installation Test Error

  invalid manual Issues explained in the manual

  tanishatamara asked Jan 5, 2023 in Q&A · Unanswered

  

  

  2
• 1 You must be logged in to vote

  🙏

  Error in converting biom to text file

  invalid

  aayushirambia asked Jan 3, 2023 in Q&A · Unanswered

  

  

  1
• 2 You must be logged in to vote

  🙏

  metaSpades can't input two or more files

  siduanmiao asked Nov 13, 2022 in Q&A · Unanswered

  

  

  2