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updated help text
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ridz1208 committed Nov 25, 2024
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33 changes: 25 additions & 8 deletions modules/biobank/help/biobank.md
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Expand Up @@ -22,7 +22,26 @@ The Biobank Module is your centralized hub for managing biological specimens wit
- **Updating Information:** Modify the necessary fields such as specimen type, attributes, or associated protocols.
- **Saving Changes:** Click **Save** to apply the updates to the specimen's metadata.

*Note: Ensure all changes adhere to the standardized protocols for data integrity.*
### Batch Processing Specimens
Efficiently manage multiple specimens simultaneously using batch processing.
1. **Initiate Batch Processing:** Click the **Batch Process** button located above the specimens table.
2. **Select Specimens:** Select multiple specimens by scanning or searching.
3. **Choose Processing Action:** Fill out the form to indicate how to specimen were processed.
4. **Confirm Action:** After filling the form, click **Submit** to apply the changes to all selected specimens.

### Batch Editing Specimens
Make simultaneous updates to multiple specimens with ease.
1. **Initiate Batch Editing:** Click the **Batch Edit** button located above the specimens table.
2. **Select Specimens:** Select multiple specimens by scanning or searching.
3. **Modify Fields:** In the batch edit interface, update the desired fields such as status, type, or associated protocols. Changes made here will apply to all selected specimens.
4. **Save Changes:** After making the necessary updates, click **Save** to apply the modifications to all selected specimens.

### Pooling Specimens
Pooling specimens allows you to group multiple specimens into a single pool for streamlined processing and analysis. This is particularly useful for managing large datasets and ensuring efficient laboratory workflows.
1. **Initiate Pooling:** Click the **Pool Specimens** button located above the specimens table.
2. **Select Specimens:** Select multiple specimens by scanning or searching.
3. **Configure Pool Details:** In the pooling interface, provide necessary details for the new pool.
4. **Confirm Pooling:** After entering the pool details, click **Create Pool** to group the selected specimens into the newly defined pool.

## Managing Containers

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- **Sort Data:** Click on column headers to sort pools based on criteria such as creation date or associated specimens.
- **Detailed View:** Click on a pool entry to see detailed information about the specimens included and pool attributes.

### Creating a Pool
1. Navigate to the **Pools** tab.
2. Click on **Create Pool**.
3. Select the specimens you want to combine into a pool.
4. Assign any relevant attributes and click **Save**.

*Note: Use pools to streamline specimen processing and analysis.*
### Aliquoting Pools
Efficiently divide a pool into smaller aliquots for further processing or distribution.
1. **Initiate Aliquoting: **Click the **Aliquot** button located within the pool's row in the pool table.
2. **Specify Aliquot Details:** Enter the number of aliquots you want to create. Assign aliquot types and specify any relevant attributes for each aliquot.
3. **Confirm Aliquoting:** After entering the necessary details, click **Submit** to split the pool into the specified aliquots.

## Handling Shipments

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2 changes: 1 addition & 1 deletion modules/biobank/php/BadRequest.php
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<?php declare(string_types=1);
<?php declare(strict_types=1);

/**
* This file contains the BadRequest exception type.
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