[tools] Implement lorisInstance in tools directory

[victori444]

Brief summary of changes

• Implements lorisInstance in detect_conflicts.php

• Resolves other errors found in detect_conflicts.php & fix_candidate_age.php (accessing $commentIDs as an array & querying Test_name)

• Have you updated related documentation?

Testing instructions (if applicable)

1. Run each of the scripts below and verify that no errors are thrown

• delete_ignored_conflicts.php
• detect_conflicts.php
• lorisform_parser.php
• fix_candidate_age.php
• score_instrument.php - does not function as intended, fixes made in [NDB_BVL_Instrument] Modify InstanceData Setting #9476

Link(s) to related issue(s)

• Resolves [tools] Implement LorisInstance in tools directory #8058 (Reference the issue this fixes, if any.)

[CamilleBeau]

@victori444 Assigning to you to resolve conflicts and then I'll test / review!

[driusan]

does this resolve the issue listed or only partially resolve it? (There are many places listed in the issue and merging it with "Resolved" will close the issue automatically)

[CamilleBeau]

According to the comments of the issue, these were the only 2 remaining out of the initial list

[CamilleBeau]

I'm getting a lot of these when running detect_conflicts -r all -y:

[CamilleBeau]

Could we remove this change?

[CamilleBeau]

Still seeing just a whitespace change here

[CamilleBeau]

Getting this error when running:

(base) lorisadmin@cbeaudoin-dev:/var/www/loris/tools$ php detect_conflicts.php -r all -y
Array
(
[r] => all
[y] =>
)
Removing ignored conflicts

PHP Fatal error: Uncaught Error: Cannot use object of type LORIS\Database\Query as array in /var/www/loris/tools/detect_conflicts.php:595
Stack trace:
#0 /var/www/loris/tools/detect_conflicts.php(146): detectIgnoreColumns()
#1 {main}
thrown in /var/www/loris/tools/detect_conflicts.php on line 595

[CamilleBeau]

Still seeing just a whitespace change here

[victori444]

Getting this error when running:

(base) lorisadmin@cbeaudoin-dev:/var/www/loris/tools$ php detect_conflicts.php -r all -y
Array
(
[r] => all
[y] =>
)
Removing ignored conflicts
PHP Fatal error: Uncaught Error: Cannot use object of type LORIS\Database\Query as array in /var/www/loris/tools/detect_conflicts.php:595
Stack trace:
#0 /var/www/loris/tools/detect_conflicts.php(146): detectIgnoreColumns()
#1 {main}
thrown in /var/www/loris/tools/detect_conflicts.php on line 595

Hm I don't get this error - I think this may be the error that the PR changes resolve since line 595 in the current script is where $commentids is being accessed as an array ($commentids[0]['CommentID'])