JHUAPL DMD 2024-11-30 #10
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| name: Hub Submission Validation (R) | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: main | |
| paths: | |
| - 'model-output/**' | |
| - 'model-metadata/*' | |
| - '!**README**' | |
| jobs: | |
| validate_and_check: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Fetch the entire Git history to ensure all commits are available | |
| # Set up R environment | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| install-r: false | |
| use-public-rspm: true | |
| extra-repositories: 'https://hubverse-org.r-universe.dev' | |
| - name: Update R | |
| run: | | |
| sudo apt-get update | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| packages: | | |
| any::hubValidations | |
| any::sessioninfo | |
| # Check for changes outside allowed directories | |
| - name: Get base and head commits | |
| id: commits | |
| run: | | |
| echo "BASE_COMMIT=${{ github.event.pull_request.base.sha }}" >> $GITHUB_ENV | |
| echo "HEAD_COMMIT=${{ github.event.pull_request.head.sha }}" >> $GITHUB_ENV | |
| - name: Run git diff to find changed files | |
| run: | | |
| git diff --name-only ${{ env.BASE_COMMIT }} ${{ env.HEAD_COMMIT }} > changed_files.txt | |
| echo "Changed files:" | |
| cat changed_files.txt | |
| - name: Check if changes are outside allowed directories | |
| run: | | |
| # Filter out files not in the allowed directories | |
| UNALLOWED_CHANGES=$(grep -vE '^model-metadata/|^model-output/' changed_files.txt || true) | |
| if [[ -n "$UNALLOWED_CHANGES" ]]; then | |
| echo "Error: Changes outside allowed directories detected:" | |
| echo "$UNALLOWED_CHANGES" | |
| exit 1 | |
| else | |
| echo "All changes are within allowed directories." | |
| fi | |
| # Run R-based validations | |
| - name: Run validations | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| run: | | |
| library("hubValidations") | |
| v <- hubValidations::validate_pr( | |
| gh_repo = Sys.getenv("GITHUB_REPOSITORY"), | |
| pr_number = Sys.getenv("PR_NUMBER"), | |
| skip_submit_window_check = FALSE | |
| ) | |
| hubValidations::check_for_errors(v, verbose = TRUE) | |
| shell: Rscript {0} |