Do not create cell for 0D input structure #2519
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| # Run basic tests for this app on the latest aiidalab-docker image. | |
| name: continuous-integration | |
| on: [push, pull_request] | |
| # https://docs.github.com/en/actions/using-jobs/using-concurrency | |
| concurrency: | |
| # only cancel in-progress jobs or runs for the current workflow - matches against branch & tags | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| pre-commit: | |
| # Adapted from: https://github.com/CasperWA/voila-optimade-client | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| cache: pip | |
| cache-dependency-path: | | |
| .pre-commit-config.yaml | |
| **/setup.cfg | |
| **/pyproject.toml | |
| **/requirements*.txt | |
| - uses: pre-commit/[email protected] | |
| test-notebooks: | |
| needs: [pre-commit] | |
| strategy: | |
| matrix: | |
| tag: [latest] | |
| browser: [Chrome, Firefox] | |
| python-version: ['3.10'] | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| steps: | |
| - name: Check out app | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| cache-dependency-path: | | |
| **/setup.cfg | |
| **/pyproject.toml | |
| **/requirements*.txt | |
| - name: Install package | |
| run: pip install -e .[dev] | |
| - name: Set jupyter token env | |
| run: echo "JUPYTER_TOKEN=$(openssl rand -hex 32)" >> $GITHUB_ENV | |
| # The Firefox and its engine geckodrive need do be installed manually to run | |
| # selenium tests. | |
| - name: Install Firefox | |
| uses: browser-actions/setup-firefox@latest | |
| with: | |
| firefox-version: '96.0' | |
| if: matrix.browser == 'Firefox' | |
| - name: Install geckodriver | |
| run: | | |
| wget -c https://github.com/mozilla/geckodriver/releases/download/v0.30.0/geckodriver-v0.30.0-linux64.tar.gz | |
| tar xf geckodriver-v0.30.0-linux64.tar.gz -C /usr/local/bin | |
| if: matrix.browser == 'Firefox' | |
| - name: Run pytest | |
| run: pytest -v --driver ${{ matrix.browser }} tests_notebooks | |
| env: | |
| TAG: ${{ matrix.tag }} | |
| - name: Upload screenshots as artifacts | |
| if: always() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Screenshots-${{ matrix.tag }}-${{ matrix.browser }} | |
| path: screenshots/ | |
| if-no-files-found: error | |
| test-package: | |
| needs: [pre-commit] | |
| strategy: | |
| matrix: | |
| tag: [latest] | |
| python-version: ['3.8', '3.9', '3.10'] | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| services: | |
| rabbitmq: | |
| image: rabbitmq:latest | |
| ports: | |
| - 5672:5672 | |
| steps: | |
| - name: Check out app | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| cache-dependency-path: | | |
| **/setup.cfg | |
| **/pyproject.toml | |
| **/requirements*.txt | |
| - name: Install package | |
| run: pip install -e .[dev,smiles] | |
| - name: Run pytest | |
| run: pytest -v tests --cov | |
| env: | |
| TAG: ${{ matrix.tag }} | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| flags: python-${{ matrix.python-version }} |