hominin_bed_files

prelim_files: contains files used to explore dataset and practice coding

makeREFSEQbed: contains python code to merge refseq gene file and list of refseq gene with associated EP values

ChromosomeFiles: contains bed files created from makeREFSEQbed code

Chr22Add: temporary directory; test for adding noncallable sites

Name		Name	Last commit message	Last commit date
Latest commit History 117 Commits
ChromosomeFiles		ChromosomeFiles
PythonScripts		PythonScripts
TestVcfs		TestVcfs
ToyFiles		ToyFiles
callable_uncallable		callable_uncallable
makeREFSEQbed		makeREFSEQbed
prelim_files		prelim_files
.gitignore		.gitignore
AddNoncall.py		AddNoncall.py
AncesterFinal.py		AncesterFinal.py
AncesterStates22.csv		AncesterStates22.csv
AncesterVCF.py		AncesterVCF.py
Ensembl.py		Ensembl.py
EnsemblVcf.py		EnsemblVcf.py
Frequency.py		Frequency.py
README.md		README.md
VCF.py		VCF.py
archaicAddNoncall.py		archaicAddNoncall.py
chrName.txt		chrName.txt
ep_chr22_primates_amp_june13.txt		ep_chr22_primates_amp_june13.txt
error_ep_june13.txt		error_ep_june13.txt
extract_ep_freq_temp.py		extract_ep_freq_temp.py
primate_branch_ids.txt		primate_branch_ids.txt
primate_pipeline.py		primate_pipeline.py
split.sh		split.sh

Provide feedback