Added integration test workflow #1
Workflow file for this run
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name: Integration test | |
on: | |
push: | |
branches: 'main' | |
pull_request: | |
branches: 'main' | |
workflow_dispatch: | |
jobs: | |
build: | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Checkout repo | |
uses: actions/checkout@v1 | |
- name: Set up Python 3.6 | |
uses: actions/setup-python@v2 | |
with: | |
python-version: '3.6' | |
- name: Install dependencies | |
run: pip install wheel setuptools | |
- name: Build package | |
run: python setup.py bdist_wheel | |
- name: Upload Python wheel | |
uses: actions/upload-artifact@v3 | |
with: | |
name: "Python wheel" | |
path: ./dist/* | |
if-no-files-found: error | |
integration-tests: | |
needs: build | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [macos-latest] | |
python: ["3.10"] | |
steps: | |
- name: Checkout repo | |
uses: actions/checkout@v1 | |
- name: Set up Python ${{ matrix.python }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python }} | |
- name: Install dependencies | |
run: pip install wheel setuptools | |
- name: Download artifact | |
uses: actions/download-artifact@v3 | |
with: | |
name: "Python wheel" | |
- name: Install wheel | |
run: pip install --find-links=. vsi2tif-* | |
shell: bash | |
- name: Install vips | |
run: | | |
brew install --cask zulu@8 | |
brew install vips | |
- name: Install bftools | |
run: | | |
wget http://downloads.openmicroscopy.org/latest/bio-formats5.6/artifacts/bftools.zip | |
unzip bftools.zip | |
- name: Download test data | |
run: | | |
wget https://openslide.cs.cmu.edu/download/openslide-testdata/Olympus/OS-2.zip | |
unzip OS-2.zip | |
- name: Test single conversion | |
run: vsi2tif -i ./OS-2.vsi -o ./OS-2.tif -b bftools/bfconvert -v 0 | |
shell: bash |